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The map label for this gene is csd [H]

Identifier: 153952409

GI number: 153952409

Start: 1070529

End: 1071797

Strand: Direct

Name: csd [H]

Synonym: JJD26997_1221

Alternate gene names: 153952409

Gene position: 1070529-1071797 (Clockwise)

Preceding gene: 153951182

Following gene: 153951426

Centisome position: 58.02

GC content: 30.02

Gene sequence:

>1269_bases
TTGCAAATTTCAGATTTAAAAAAAGAATTAATCTTAAAAAAAGGTATTTTGTATTTTGACTTCACAGCAAGCGCTTTAGC
TCTAAAATGCGTAGAAAAAGAAATTTCAAAAATTCTTCCAACCTATGCAAACACACATTCTGATAGCTCTTTGAATTCTT
TTAAAACTCAACAAATTTACGAACAAGCAAGAAAAGATATAAAAAAAAGTTTATCACTAGATAAAAATTTTGCCCTTATA
GCTTGCGGAACAGGATCAAGCAGTGCTATTAAAAAATTTCAAGAATTGATCGGCATTTACATTCCTCCTCTTGTAAAAGA
AAGATATTTTACACAAATTGATAAAAATACTTTACCTTTAGTTATCGTAGGACCTTACGAACATCATTCTAATGAACTTT
CATTTCGAGAAGGCTTGTGTGAATGTATTAGAATTCCCTTAGATAAAAATGGAGAAATTGATTTTGATTTTCTAGAAAAA
ACTTTACAAAAAAACAAAAAAAGAAAAATAATCGCTAGCTTTTCTTTAGCTTCAAATGTTACTGGGATATTAAGTGATTA
CAAACGCATTTCTGAAATGGTTCGTAAATTTAAAGGGATAGTTGCTTTTGATGCATCTAGTTTCATTCCTTATAAAAACA
TATCTTGTCAATACTATGATGCGTTGTTTATAAGTTCTCATAAATTAATCGGCGGTATTGGCGGTTCTGGACTTTTAGCC
ATCAAAAAAGATCTTTGTGGAAACAAGCCTAGCTTTGCCGCAGGTGGAACTGTAGGCTATGTTTCTCGCACTTCACAATA
CTACCTTTGCAATGAAGAAGCTTTAGAAGAAGGAGGAACGCCTGGAATTTTACAACTCATTCGCGCTAGCTTAGCTTTTA
AAATCAAAAATTCTATAGGGGTTAAAAATATAGAAAAAAAAGAAGAAATTCTAAAAGATTATTTTTTTGAAAAACTAAAA
ACTATACCTAATTTAATTTTATACGCAAAGAATTTAAAAACTCGATTACCTATTTTTGCTTTCAATATCAAAGGAATTTC
TCCTTTTGATATCGCTTACGAACTTAGTAAAAAATACCACATAGAAACACGCGCTGGATGTGCTTGTGCCGGGCCTTATG
GTCATGATTTACTAGGCTTAAAAGATAATCAAAAACTTAAAACAAAACCAGGTTGGTTAAGAATAAGTTTGCATTATACA
CATGAAAAAGAGAATATTGATTATTTTTTCAATGCTTTAAATAAAACTATAGTAAAATTATCGCATTAA

Upstream 100 bases:

>100_bases
AAATTCTTATGTAAATCTACAAAGTTCTTAAATTTTATATTTTTCCTTTTTATAAAGCATTTTTATAGTATAATTTTAGC
AAATTTTTAAAGGATTGTAT

Downstream 100 bases:

>100_bases
AATATTATAGTTTTATTATTATGTATAAAAATTCTATCTTCAAAAGCCAAATCAAGCGCTTTCGAAAGAACATCTTTTTC
TATATTTCTACCTGCTTGTT

Product: aminotransferase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MQISDLKKELILKKGILYFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDKNFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEEALEEGGTPGILQLIRASLAFKIKNSIGVKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKENIDYFFNALNKTIVKLSH

Sequences:

>Translated_422_residues
MQISDLKKELILKKGILYFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDKNFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEEALEEGGTPGILQLIRASLAFKIKNSIGVKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKENIDYFFNALNKTIVKLSH
>Mature_422_residues
MQISDLKKELILKKGILYFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDKNFALI
ACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEK
TLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
IKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEEALEEGGTPGILQLIRASLAFKIKNSIGVKNIEKKEEILKDYFFEKLK
TIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYT
HEKENIDYFFNALNKTIVKLSH

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=303, Percent_Identity=26.0726072607261, Blast_Score=88, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193211090, Length=443, Percent_Identity=30.9255079006772, Blast_Score=199, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 47526; Mature: 47526

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00595 AA_TRANSFER_CLASS_5 ; PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISDLKKELILKKGILYFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIY
CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH
EQARKDIKKSLSLDKNFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPL
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCE
VIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQKNKKRKIIASFSLASNV
EEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEEEEHHHHHHH
TGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
HHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEHEEEEECCHHEECCCCCCCEE
IKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEEALEEGGTPGILQLIRASLAFKIKNSIG
EEHHHCCCCCCCCCCCCEEEEECCCEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
VKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYH
CCCCHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCEEEEEECCCCHHHHHHHHCCCEE
IETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHEKENIDYFFNALNKTIVKL
EECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHEEE
SH
CC
>Mature Secondary Structure
MQISDLKKELILKKGILYFDFTASALALKCVEKEISKILPTYANTHSDSSLNSFKTQQIY
CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH
EQARKDIKKSLSLDKNFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPL
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCE
VIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQKNKKRKIIASFSLASNV
EEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEEEEHHHHHHH
TGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDALFISSHKLIGGIGGSGLLA
HHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEHEEEEECCHHEECCCCCCCEE
IKKDLCGNKPSFAAGGTVGYVSRTSQYYLCNEEALEEGGTPGILQLIRASLAFKIKNSIG
EEHHHCCCCCCCCCCCCEEEEECCCEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
VKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNIKGISPFDIAYELSKKYH
CCCCHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCEEEEEECCCCHHHHHHHHCCCEE
IETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRISLHYTHEKENIDYFFNALNKTIVKL
EECCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHEEE
SH
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA