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The map label for this gene is yggS [C]

Identifier: 153951807

GI number: 153951807

Start: 1134255

End: 1134887

Strand: Direct

Name: yggS [C]

Synonym: JJD26997_1287

Alternate gene names: 153951807

Gene position: 1134255-1134887 (Clockwise)

Preceding gene: 153952656

Following gene: 153952403

Centisome position: 61.47

GC content: 29.7

Gene sequence:

>633_bases
ATGACTTTAGAGCAAATTTTAGAAAAAACCAAAAATATTCGTCTTGTAGCCGCAAGCAAGTATGTCGATGCAAGTATAAT
TGAAAAGCTTTTTGATCAAGGTATAGTAGAATTTGGAGAAAATCAAGTCCAAGCTCTAGCACAAAAAAAAGAAAATCTTG
ATGAAAAAAAACTAAATATAAAATGGCATTTTATAGGAACGCTACAAAGTAACAAAATCAATCTCTTAATCAAACAAAAA
CCTATATTATGGCACTCTTGCAATGGTATTAAAATAGCTAAAGCTATGGACAAAAGACTTGATTATAAATTAAACACTTT
ACTAGAAATCAATAGTGCGAATGAAAATAGCAAAAGCGGCCTAAATCCAAATCAAGCTATAGAAGAATATTTACAAATAC
AAGAAGAATGTCCTAATCTAAATCTTTGTGGTGTAATGAGTATAGGCTCACACAGCCAAGATAGAGAAAGTATTATAAAA
AGCTTTGAAACTACATTTAAAATTTATGAAATTCTTCAAAAACATGGGGCTAAAATTTGCTCTATGGGGATGAGTAACGA
TTTTGAAATTGCTATAAAATGCGGATCCAACTTGGTAAGACTTGGAAGCATTTTATTTAAAAATCTTAAGTAA

Upstream 100 bases:

>100_bases
AAATGTTGCTTTTGTTACTGTACAAAACCAGCTTCAAAGCAAAATTGCTAATTTGCTACAATAATATAAGCCCTAAAATA
GGGCTTATTTCTTTATCAAA

Downstream 100 bases:

>100_bases
GAACAATCTTACACTTAAGCATATTTATTAGAAATTTCTTCTACTATACTATCAGAGATAATAAAATCCGTATGATAAAG
CAAGCAAGATCCCGTGCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQSNKINLLIKQK
PILWHSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLNPNQAIEEYLQIQEECPNLNLCGVMSIGSHSQDRESIIK
SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK

Sequences:

>Translated_210_residues
MTLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQSNKINLLIKQK
PILWHSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLNPNQAIEEYLQIQEECPNLNLCGVMSIGSHSQDRESIIK
SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK
>Mature_209_residues
TLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQSNKINLLIKQKP
ILWHSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLNPNQAIEEYLQIQEECPNLNLCGVMSIGSHSQDRESIIKS
FETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=207, Percent_Identity=34.7826086956522, Blast_Score=104, Evalue=6e-23,
Organism=Escherichia coli, GI1789321, Length=206, Percent_Identity=34.9514563106796, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17533025, Length=213, Percent_Identity=37.0892018779343, Blast_Score=113, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=37.6744186046512, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI45550861, Length=224, Percent_Identity=33.9285714285714, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23814; Mature: 23683

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNI
CCHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEE
KWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSG
EEEEEEEEECCEEEEEEECCCCEEECCCCEEHHHHHHHHHCCEEHHEEEECCCCCCCCCC
LNPNQAIEEYLQIQEECPNLNLCGVMSIGSHSQDRESIIKSFETTFKIYEILQKHGAKIC
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SMGMSNDFEIAIKCGSNLVRLGSILFKNLK
CCCCCCCCEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TLEQILEKTKNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNI
CHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEE
KWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSG
EEEEEEEEECCEEEEEEECCCCEEECCCCEEHHHHHHHHHCCEEHHEEEECCCCCCCCCC
LNPNQAIEEYLQIQEECPNLNLCGVMSIGSHSQDRESIIKSFETTFKIYEILQKHGAKIC
CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SMGMSNDFEIAIKCGSNLVRLGSILFKNLK
CCCCCCCCEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]