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The map label for this gene is stc [H]

Identifier: 153937722

GI number: 153937722

Start: 1755813

End: 1757723

Strand: Direct

Name: stc [H]

Synonym: CLC_1668

Alternate gene names: 153937722

Gene position: 1755813-1757723 (Clockwise)

Preceding gene: 153936966

Following gene: 153937364

Centisome position: 46.69

GC content: 28.05

Gene sequence:

>1911_bases
TTGATTTATGGTAAAGAGAAACAAGATAATATAATAAAAAAATCTCATGAGAGATCTGTTTATTTTGGAATAGAGGAAAA
TAGAGTTTTCCCTAAAAAAATTCTTAAAGGGAAAGAAATTACCAATAATATAGAAAAAAATAAGAGCTTTTTAAAGGTTG
CATCTCCTTTTATAGATATATTATATGATTTTTTAAAAGGGTCAGAGTTTTTTATAATTTTAACAGATAAAGAAGGATGT
ATTTTAAAAATTATTGGAGATAAAGAAGTAATGGATATTGCTAATAATTTAAATATGGTAGTGGGAGCATTTATGTCAGA
AAATAGTATTGGTACCAATGCTATGGGAACAGCTATAAAGGAAGACATACCTATTCAAATATCTGAAAGGGAACATTTTA
TAAAGGCTTATCACAGGTGGACCTGCTCTGCAGCCCCTATACATGATATAAATGGAGATATAATAGGATGTTTAAATTTA
ACTGGAGATAGGGATAGAGTTCATTCTCACACTTTAGGATTAGTTGTAGCAGCTGTTAAATCTATAGAAAATCAAATAAA
TGTAGATAATACAAATAAAAAATTATTAGAAACTTACCAATATATGAATACTATAGTAGATTCAATATCTTCAGGAATAT
ATGTGGTGGATTTTAGAGGAAAGATTAAAACAATAAATAAAGCCGCCTGTAATATTCTTGGAATTGAAGATAAGGATGTA
TTAGATAAAAATGTAGAAAACATATTACCCAATTGGCATCATATATTTGAAAGAATTAAAAATGGTAAACCATATGAGGA
TAAGGAAGCAGTTTTAAATGATAAATTGATTAAGGGAAGATATAATGTTTCTGCTACACCAATACAAATAGAAAATAAAA
TAATAGGAATGGTTATTGTTTTTAAGGAAATAAAAACTGTGTTAGACTTAGTTAATAAATATAGTGGTATGAGAGCTGTG
TATAACTTTGAAGATATTATAGGTGAAAGTAAAGAGATAAAAAAGGTAATAAATTATGCCAAAAGTATAAGTTCATCTCC
ATCTACTGTATTAATTGAAGGAGAAAGTGGTACAGGAAAAGAATTATTGGCACAATCAATTCACAATTATGGTGATAGAA
GAGAAAACAGTTTTATCGCTTTAAATTGTGGAGCTATACCTAAAAGTTTAATAGAAAGTGAGCTTTTTGGATATGAAGAT
GGAGCTTTTACGGGAGCAAGAAGAGGTGGACATGCAGGTAAATTTGAATTGGCTAATGGAGGAACTCTATTTTTAGATGA
AATTGGAGAAATGCCTTTAGATATGCAAGTGAGTTTACTTAGAGTTTTGCAAGAAGGATATGTAACAAGAGTCGGTGGAG
ATAAAATAATACCCGTAGATGTAAGAATTATTGCTGCTACTAATAAAGATTTAAAAAAAGAAGTAGAAAAGGGGACCTTT
AGACAAGATTTATATTATAGATTAAGTGTAATACCTATAAAATTACCTCCTATTAGAGAAAGAAAGGGAGATTTGCCCAT
ACTTATTAAATATTTTTTTAGGATTAAATCTATAAAATTAAACAAACCAATGCCTCACATAAAGGAAGATATATATCATA
ATATGTTACAGTATAATTGGCCAGGTAATATAAGGGAACTGGAAAATTTTATAGAGAATATAGTTAATTTAAGGGGAGAT
AGTTCTTTTATGTTGGAAGAGGATTTTAAAAATATTGAGGATAAGCATAATTTTCATGAAAATAATATAGGGCTTTTATA
TAGTAATAAAATAAGAACCCTAGAGGAAATTGAAAAAGAAGCTATTATAAATACAGTGAATGAATATAATAGTAATATGT
CACAAAGCGCAAAGGCTCTTGGTATAACTAGGGCTACCCTATATTCAAAACTTAAGAAATATAATATTTAA

Upstream 100 bases:

>100_bases
ATAACTTATAGGTATTTCCCTAGATTTTTTAAGAACTTGCTTTATAAATCAAATAAAAATATGAATTTTTGATATAATAT
TCACATAAGGAAGTGATAAA

Downstream 100 bases:

>100_bases
TTTTTTAAAGATATTTATTCATAGTTAGGAAACTAATTATTAGAGTAAAATTGAATTTTGTAGAAAATCATCATTATAAA
TTTTAAATAAAATAATAAGA

Product: sensory box sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MIYGKEKQDNIIKKSHERSVYFGIEENRVFPKKILKGKEITNNIEKNKSFLKVASPFIDILYDFLKGSEFFIILTDKEGC
ILKIIGDKEVMDIANNLNMVVGAFMSENSIGTNAMGTAIKEDIPIQISEREHFIKAYHRWTCSAAPIHDINGDIIGCLNL
TGDRDRVHSHTLGLVVAAVKSIENQINVDNTNKKLLETYQYMNTIVDSISSGIYVVDFRGKIKTINKAACNILGIEDKDV
LDKNVENILPNWHHIFERIKNGKPYEDKEAVLNDKLIKGRYNVSATPIQIENKIIGMVIVFKEIKTVLDLVNKYSGMRAV
YNFEDIIGESKEIKKVINYAKSISSSPSTVLIEGESGTGKELLAQSIHNYGDRRENSFIALNCGAIPKSLIESELFGYED
GAFTGARRGGHAGKFELANGGTLFLDEIGEMPLDMQVSLLRVLQEGYVTRVGGDKIIPVDVRIIAATNKDLKKEVEKGTF
RQDLYYRLSVIPIKLPPIRERKGDLPILIKYFFRIKSIKLNKPMPHIKEDIYHNMLQYNWPGNIRELENFIENIVNLRGD
SSFMLEEDFKNIEDKHNFHENNIGLLYSNKIRTLEEIEKEAIINTVNEYNSNMSQSAKALGITRATLYSKLKKYNI

Sequences:

>Translated_636_residues
MIYGKEKQDNIIKKSHERSVYFGIEENRVFPKKILKGKEITNNIEKNKSFLKVASPFIDILYDFLKGSEFFIILTDKEGC
ILKIIGDKEVMDIANNLNMVVGAFMSENSIGTNAMGTAIKEDIPIQISEREHFIKAYHRWTCSAAPIHDINGDIIGCLNL
TGDRDRVHSHTLGLVVAAVKSIENQINVDNTNKKLLETYQYMNTIVDSISSGIYVVDFRGKIKTINKAACNILGIEDKDV
LDKNVENILPNWHHIFERIKNGKPYEDKEAVLNDKLIKGRYNVSATPIQIENKIIGMVIVFKEIKTVLDLVNKYSGMRAV
YNFEDIIGESKEIKKVINYAKSISSSPSTVLIEGESGTGKELLAQSIHNYGDRRENSFIALNCGAIPKSLIESELFGYED
GAFTGARRGGHAGKFELANGGTLFLDEIGEMPLDMQVSLLRVLQEGYVTRVGGDKIIPVDVRIIAATNKDLKKEVEKGTF
RQDLYYRLSVIPIKLPPIRERKGDLPILIKYFFRIKSIKLNKPMPHIKEDIYHNMLQYNWPGNIRELENFIENIVNLRGD
SSFMLEEDFKNIEDKHNFHENNIGLLYSNKIRTLEEIEKEAIINTVNEYNSNMSQSAKALGITRATLYSKLKKYNI
>Mature_636_residues
MIYGKEKQDNIIKKSHERSVYFGIEENRVFPKKILKGKEITNNIEKNKSFLKVASPFIDILYDFLKGSEFFIILTDKEGC
ILKIIGDKEVMDIANNLNMVVGAFMSENSIGTNAMGTAIKEDIPIQISEREHFIKAYHRWTCSAAPIHDINGDIIGCLNL
TGDRDRVHSHTLGLVVAAVKSIENQINVDNTNKKLLETYQYMNTIVDSISSGIYVVDFRGKIKTINKAACNILGIEDKDV
LDKNVENILPNWHHIFERIKNGKPYEDKEAVLNDKLIKGRYNVSATPIQIENKIIGMVIVFKEIKTVLDLVNKYSGMRAV
YNFEDIIGESKEIKKVINYAKSISSSPSTVLIEGESGTGKELLAQSIHNYGDRRENSFIALNCGAIPKSLIESELFGYED
GAFTGARRGGHAGKFELANGGTLFLDEIGEMPLDMQVSLLRVLQEGYVTRVGGDKIIPVDVRIIAATNKDLKKEVEKGTF
RQDLYYRLSVIPIKLPPIRERKGDLPILIKYFFRIKSIKLNKPMPHIKEDIYHNMLQYNWPGNIRELENFIENIVNLRGD
SSFMLEEDFKNIEDKHNFHENNIGLLYSNKIRTLEEIEKEAIINTVNEYNSNMSQSAKALGITRATLYSKLKKYNI

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=478, Percent_Identity=34.7280334728033, Blast_Score=277, Evalue=1e-75,
Organism=Escherichia coli, GI87082117, Length=321, Percent_Identity=42.0560747663551, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=41.2650602409639, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1790437, Length=308, Percent_Identity=43.8311688311688, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081858, Length=641, Percent_Identity=26.3650546021841, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1789087, Length=316, Percent_Identity=43.6708860759494, Blast_Score=245, Evalue=8e-66,
Organism=Escherichia coli, GI1790299, Length=331, Percent_Identity=39.8791540785499, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1788550, Length=329, Percent_Identity=41.0334346504559, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1788905, Length=325, Percent_Identity=38.4615384615385, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI87082152, Length=319, Percent_Identity=39.8119122257053, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=322, Percent_Identity=38.1987577639752, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1787583, Length=438, Percent_Identity=30.5936073059361, Blast_Score=201, Evalue=2e-52,
Organism=Escherichia coli, GI1789828, Length=221, Percent_Identity=33.0316742081448, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 72216; Mature: 72216

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYGKEKQDNIIKKSHERSVYFGIEENRVFPKKILKGKEITNNIEKNKSFLKVASPFIDI
CCCCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LYDFLKGSEFFIILTDKEGCILKIIGDKEVMDIANNLNMVVGAFMSENSIGTNAMGTAIK
HHHHHCCCCEEEEEECCCCCEEEEECCHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHH
EDIPIQISEREHFIKAYHRWTCSAAPIHDINGDIIGCLNLTGDRDRVHSHTLGLVVAAVK
CCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
SIENQINVDNTNKKLLETYQYMNTIVDSISSGIYVVDFRGKIKTINKAACNILGIEDKDV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCEEECCCCHHH
LDKNVENILPNWHHIFERIKNGKPYEDKEAVLNDKLIKGRYNVSATPIQIENKIIGMVIV
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCCCCCCCEEECCCEEEHHHH
FKEIKTVLDLVNKYSGMRAVYNFEDIIGESKEIKKVINYAKSISSSPSTVLIEGESGTGK
HHHHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
ELLAQSIHNYGDRRENSFIALNCGAIPKSLIESELFGYEDGAFTGARRGGHAGKFELANG
HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC
GTLFLDEIGEMPLDMQVSLLRVLQEGYVTRVGGDKIIPVDVRIIAATNKDLKKEVEKGTF
CEEEEHHHCCCCCCHHHHHHHHHHHCCEEEECCCEEEEEEEEEEEECCHHHHHHHHHCCH
RQDLYYRLSVIPIKLPPIRERKGDLPILIKYFFRIKSIKLNKPMPHIKEDIYHNMLQYNW
HHHHEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECC
PGNIRELENFIENIVNLRGDSSFMLEEDFKNIEDKHNFHENNIGLLYSNKIRTLEEIEKE
CCCHHHHHHHHHHHHHCCCCCCEEEHHHHHCHHHHCCCCCCCEEEEECCCHHHHHHHHHH
AIINTVNEYNSNMSQSAKALGITRATLYSKLKKYNI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIYGKEKQDNIIKKSHERSVYFGIEENRVFPKKILKGKEITNNIEKNKSFLKVASPFIDI
CCCCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LYDFLKGSEFFIILTDKEGCILKIIGDKEVMDIANNLNMVVGAFMSENSIGTNAMGTAIK
HHHHHCCCCEEEEEECCCCCEEEEECCHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHH
EDIPIQISEREHFIKAYHRWTCSAAPIHDINGDIIGCLNLTGDRDRVHSHTLGLVVAAVK
CCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
SIENQINVDNTNKKLLETYQYMNTIVDSISSGIYVVDFRGKIKTINKAACNILGIEDKDV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCEEECCCCHHH
LDKNVENILPNWHHIFERIKNGKPYEDKEAVLNDKLIKGRYNVSATPIQIENKIIGMVIV
HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCCCCCCCEEECCCEEEHHHH
FKEIKTVLDLVNKYSGMRAVYNFEDIIGESKEIKKVINYAKSISSSPSTVLIEGESGTGK
HHHHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
ELLAQSIHNYGDRRENSFIALNCGAIPKSLIESELFGYEDGAFTGARRGGHAGKFELANG
HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC
GTLFLDEIGEMPLDMQVSLLRVLQEGYVTRVGGDKIIPVDVRIIAATNKDLKKEVEKGTF
CEEEEHHHCCCCCCHHHHHHHHHHHCCEEEECCCEEEEEEEEEEEECCHHHHHHHHHCCH
RQDLYYRLSVIPIKLPPIRERKGDLPILIKYFFRIKSIKLNKPMPHIKEDIYHNMLQYNW
HHHHEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECC
PGNIRELENFIENIVNLRGDSSFMLEEDFKNIEDKHNFHENNIGLLYSNKIRTLEEIEKE
CCCHHHHHHHHHHHHHCCCCCCEEEHHHHHCHHHHCCCCCCCEEEEECCCHHHHHHHHHH
AIINTVNEYNSNMSQSAKALGITRATLYSKLKKYNI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA