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The map label for this gene is cspA [H]

Identifier: 153936177

GI number: 153936177

Start: 1808987

End: 1809196

Strand: Direct

Name: cspA [H]

Synonym: CLC_1715

Alternate gene names: 153936177

Gene position: 1808987-1809196 (Clockwise)

Preceding gene: 153936875

Following gene: 153936187

Centisome position: 48.1

GC content: 33.81

Gene sequence:

>210_bases
ATGAGTATGCATACGGGAACAGTTAAATGGTTTGACAATGAAAGAGGGTATGGTTTTATAGCAGGGAATAATGGAAAAGA
TGTATATGTTCACTCTATGCAGATAAAAGAAAAAACTCTTAATAAGGATTTACACGAGGGTGAAGAGGTACTATTTGATA
TAGTAGAGAAAGAAAAGGGGCCTATAGCTATAAATGTACAAAAGCTATAG

Upstream 100 bases:

>100_bases
TATGAATTTATAAAAAGCAAAGAATATGATAGAGAGAATTTATAGATTGGAATTAATTAGCCTAAAGCATATGTAATAAA
TATTTAAAGGAGAGATATAA

Downstream 100 bases:

>100_bases
CAAATTAAATTTACGATAATTTACAAATCTTAGTTTTTTACTATAGCAAATCTATTTTCAGTGAACATAAAAGTAATTAA
ATTATATAGTGAAAATATAA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKGPIAINVQKL

Sequences:

>Translated_69_residues
MSMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKGPIAINVQKL
>Mature_68_residues
SMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKGPIAINVQKL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7879; Mature: 7748

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKG
CCCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCCCHHHHHHHHHCCCC
PIAINVQKL
CEEEEEECC
>Mature Secondary Structure 
SMHTGTVKWFDNERGYGFIAGNNGKDVYVHSMQIKEKTLNKDLHEGEEVLFDIVEKEKG
CCCCCEEEEEECCCCEEEEECCCCCEEEEEEEEECHHHHCCCCCCCHHHHHHHHHCCCC
PIAINVQKL
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]