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The map label for this gene is scpB

Identifier: 153935812

GI number: 153935812

Start: 1909363

End: 1909944

Strand: Reverse

Name: scpB

Synonym: CLC_1799

Alternate gene names: 153935812

Gene position: 1909944-1909363 (Counterclockwise)

Preceding gene: 153935515

Following gene: 153934860

Centisome position: 50.79

GC content: 27.15

Gene sequence:

>582_bases
GTGAATAAAGATCATGAAGAGCAATTAGAAATAAACGAAGTATCACAAAAAAATAAATATAAATCTATAATAGAATCCCT
TCTATTTATGAGTGGAGAACCTATTAATATAAAAGATTTAGCAACTATACTAAATTGTAAACAGGATAAAGTAAGCTCAT
TACTTAATGAAATGAACAATAGTTATGTTGGTAAGGATCGAGGTATAAAAATATTAATACATAATAGAGCTGTTCAACTA
GTAACTAAACCGGAAAATAGCATATATGTAGAAAAACTATTAAAAACTAATGTAAGACAATCTTTATCCCAGGCAGCTTT
AGAAACATTATCAATCATAGCATATAAACAACCTATAACTAGAGTGGCAATAGACGAGATAAGAGGAGTGAAAAGCGATA
GAGCTATATATACACTGCTAGAAAAAAATATTATAAAAGAATGTGGTAGACTAGATGTACCAGGTAAACCTATTTTATAT
GGTACTACAGAAGAATTCTTAAAATTTTTTGGTTTAGATAGCATAGAAGCAATTCCTAATTTAGAAGATTTACTAAAAGA
ATTTAGTAAAGAAGAAAATTAA

Upstream 100 bases:

>100_bases
GTAACTTTTTTAGCTATACTAGAGCTTATAAAGTTAAAAACAATACAAGTATATCAGTCTAATAATTTTAATGATATATA
TATAGAAAGAGGCGTTGTAT

Downstream 100 bases:

>100_bases
TTCTTAGAATGAACTAAAAAGTAGTGTAAAAGCCCCTAAGTATGTAATAGGGGCTTTTATTTAGATTTCATGATTGTTAA
AATTACAATCGCAGCTAGAA

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MNKDHEEQLEINEVSQKNKYKSIIESLLFMSGEPINIKDLATILNCKQDKVSSLLNEMNNSYVGKDRGIKILIHNRAVQL
VTKPENSIYVEKLLKTNVRQSLSQAALETLSIIAYKQPITRVAIDEIRGVKSDRAIYTLLEKNIIKECGRLDVPGKPILY
GTTEEFLKFFGLDSIEAIPNLEDLLKEFSKEEN

Sequences:

>Translated_193_residues
MNKDHEEQLEINEVSQKNKYKSIIESLLFMSGEPINIKDLATILNCKQDKVSSLLNEMNNSYVGKDRGIKILIHNRAVQL
VTKPENSIYVEKLLKTNVRQSLSQAALETLSIIAYKQPITRVAIDEIRGVKSDRAIYTLLEKNIIKECGRLDVPGKPILY
GTTEEFLKFFGLDSIEAIPNLEDLLKEFSKEEN
>Mature_193_residues
MNKDHEEQLEINEVSQKNKYKSIIESLLFMSGEPINIKDLATILNCKQDKVSSLLNEMNNSYVGKDRGIKILIHNRAVQL
VTKPENSIYVEKLLKTNVRQSLSQAALETLSIIAYKQPITRVAIDEIRGVKSDRAIYTLLEKNIIKECGRLDVPGKPILY
GTTEEFLKFFGLDSIEAIPNLEDLLKEFSKEEN

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_CLOB1 (A7FUR1)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001384114.1
- ProteinModelPortal:   A7FUR1
- SMR:   A7FUR1
- STRING:   A7FUR1
- GeneID:   5395383
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_1792
- eggNOG:   COG1386
- HOGENOM:   HBG752450
- OMA:   NILEEMQ
- ProtClustDB:   PRK00135
- BioCyc:   CBOT441770:CLB_1792-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21983; Mature: 21983

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDHEEQLEINEVSQKNKYKSIIESLLFMSGEPINIKDLATILNCKQDKVSSLLNEMNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
SYVGKDRGIKILIHNRAVQLVTKPENSIYVEKLLKTNVRQSLSQAALETLSIIAYKQPIT
CCCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RVAIDEIRGVKSDRAIYTLLEKNIIKECGRLDVPGKPILYGTTEEFLKFFGLDSIEAIPN
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCHHHHCCC
LEDLLKEFSKEEN
HHHHHHHHHCCCC
>Mature Secondary Structure
MNKDHEEQLEINEVSQKNKYKSIIESLLFMSGEPINIKDLATILNCKQDKVSSLLNEMNN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
SYVGKDRGIKILIHNRAVQLVTKPENSIYVEKLLKTNVRQSLSQAALETLSIIAYKQPIT
CCCCCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RVAIDEIRGVKSDRAIYTLLEKNIIKECGRLDVPGKPILYGTTEEFLKFFGLDSIEAIPN
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCHHHHCCC
LEDLLKEFSKEEN
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA