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The map label for this gene is sun [H]

Identifier: 153931256

GI number: 153931256

Start: 2514766

End: 2516094

Strand: Reverse

Name: sun [H]

Synonym: CLB_2380

Alternate gene names: 153931256

Gene position: 2516094-2514766 (Counterclockwise)

Preceding gene: 153931020

Following gene: 153932990

Centisome position: 65.13

GC content: 25.81

Gene sequence:

>1329_bases
ATGGATAATGCAAGAGAAGTAGCTTTGGATGTATTAAAGGCTGTATTATTTGAAGGTGCTTATTCAAACATAGTTTTAAG
TAAAAAGCTAAATAAAAGTAATTTAAAAGATAATGATAAGGCTTTAATTACCGAAATAGTTTATGGGACATTAAAATATA
AGGAAACTTTAGATATTATAATACAAAGTTATTTAAGGAATCCCATTAAAACTATGGATAAAAATATAGTTAATATATTA
AGAATAACTATATATCAAATAAGATATTTAGATAAAATACCTTCTTTTGCTGCAGTAAATGAAGCAGTAGAGATGTCAAA
AAAAATATCTATAAAATATTCAAAGTTAGTAAATGGAGTTTTAAGAAATTATATAAGAACTTATAAAAATAAAAAATTTT
ATGACCATAGAAACAACCTAGAAAAATTTAGTTTTATGTACTCCTATCCTAAATGGCTTATAAAAATGTTTATAAGCCAA
TATGGTATAGAAATAGCAGAAAAAATATTAAAAGGATTAAATGAAAGACCTAATATAACAGTTAGAGTTAATAATCTAAA
AATAGATTATGATGAGGCCTTCGAAAAATTAGGTGAATATGGGTATAATATAGAAGAAGGATATATATGTCCAGAGGCTA
TACAAATAATTAAAGGTAAAAACATAGAAAAAAACCCTTTATTTATAGAAGGGAATATTACTGTACAGGACGAAAGTGCA
ATGCTAGTGGCACCTTCTATGGAGCTTGATGAAGAAAGTATAGTTTTAGATTTATGTAGTGCTCCAGGAGGAAAAACTAC
ACATATTTCAGAAATTATGAATAATAAAAGTAAAGTATATGCTTACGATGTACACCAAAATAAGTTATCCTTAATAGAAT
CTAATGCTAAAAGATTAGGTATAAAAAATATAGAAACGGATGTAGGTGATGCAGCTGTTTTTAATAAGAAGTTAAAAGAA
AAAGCTCATAGAGTGCTCATGGATGTACCTTGCTCTGGGTTAGGTATAATAAGAAAGAAGCCAGAAATAAAATGGACTAA
AAATGAAAGAGAAATTAAAAATATTATAGCTATACAAAGAAAGATAATGAATAATGGAGCTTCTTATTTGAAAGAAGGAG
GTATACTCTTATATTCCACCTGTACTTTAAATAAAGAAGAAAATGAAGAAAATATAAACTGGTTTTTAAAAAAACATAAA
AATTTTAAAATAGAACCCTTATATTATGGTGATGTAGACAATATAATATATCATAAAGAAGGATTTGTATCCATATTGCC
TAATGATAAAATGGATGGCTTTTTTATAGCTAAATTGAAGAAATGTTAG

Upstream 100 bases:

>100_bases
TGACATATATAGCAGCGGCATTGACGGCTATATCACAATTAGTAAGACTTATAGTTTTAAGCAATAGACGAAATGATTAA
GAGAAAGGTTTAAGGATATA

Downstream 100 bases:

>100_bases
TAGGTGTTAAGATGGAAAACATATTAGACTTTACATTAGAAGAACTAAAAGAATGGCTAATATCTAAAGAAGAAAAGGCT
TTTAGAGCAAAACAAGTTTT

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MDNAREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDNDKALITEIVYGTLKYKETLDIIIQSYLRNPIKTMDKNIVNIL
RITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNGVLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQ
YGIEIAEKILKGLNERPNITVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDESA
MLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKNIETDVGDAAVFNKKLKE
KAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHK
NFKIEPLYYGDVDNIIYHKEGFVSILPNDKMDGFFIAKLKKC

Sequences:

>Translated_442_residues
MDNAREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDNDKALITEIVYGTLKYKETLDIIIQSYLRNPIKTMDKNIVNIL
RITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNGVLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQ
YGIEIAEKILKGLNERPNITVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDESA
MLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKNIETDVGDAAVFNKKLKE
KAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHK
NFKIEPLYYGDVDNIIYHKEGFVSILPNDKMDGFFIAKLKKC
>Mature_442_residues
MDNAREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDNDKALITEIVYGTLKYKETLDIIIQSYLRNPIKTMDKNIVNIL
RITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNGVLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQ
YGIEIAEKILKGLNERPNITVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDESA
MLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLGIKNIETDVGDAAVFNKKLKE
KAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQRKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHK
NFKIEPLYYGDVDNIIYHKEGFVSILPNDKMDGFFIAKLKKC

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=342, Percent_Identity=29.2397660818713, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI76150623, Length=342, Percent_Identity=29.2397660818713, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI32698918, Length=232, Percent_Identity=31.4655172413793, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI270288818, Length=253, Percent_Identity=25.6916996047431, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI8922322, Length=253, Percent_Identity=25.6916996047431, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI270288816, Length=253, Percent_Identity=25.6916996047431, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI23199998, Length=253, Percent_Identity=25.6916996047431, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI39995082, Length=202, Percent_Identity=33.1683168316832, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI301336155, Length=202, Percent_Identity=33.1683168316832, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI2367212, Length=446, Percent_Identity=31.1659192825112, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI87081985, Length=279, Percent_Identity=32.9749103942652, Blast_Score=148, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI17536757, Length=329, Percent_Identity=26.7477203647416, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI25143471, Length=183, Percent_Identity=35.5191256830601, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71998419, Length=250, Percent_Identity=29.6, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115534021, Length=172, Percent_Identity=31.3953488372093, Blast_Score=78, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6324268, Length=289, Percent_Identity=31.1418685121107, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6319447, Length=183, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI22024126, Length=312, Percent_Identity=30.7692307692308, Blast_Score=129, Evalue=6e-30,
Organism=Drosophila melanogaster, GI21355201, Length=184, Percent_Identity=32.6086956521739, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24668781, Length=214, Percent_Identity=29.9065420560748, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356513, Length=214, Percent_Identity=29.9065420560748, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356579, Length=233, Percent_Identity=24.8927038626609, Blast_Score=83, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50964; Mature: 50964

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNAREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDNDKALITEIVYGTLKYKETLDII
CCCHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNGV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEHHHHHHHHH
LRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNIT
HHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEE
VRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDESA
EEEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECEEEEECCCE
MLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLG
EEEECCCCCCCHHEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC
IKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQR
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEECCCHHHHHHHHHHHH
KIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKE
HHHHCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEECC
GFVSILPNDKMDGFFIAKLKKC
CEEEECCCCCCCCEEEEEECCC
>Mature Secondary Structure
MDNAREVALDVLKAVLFEGAYSNIVLSKKLNKSNLKDNDKALITEIVYGTLKYKETLDII
CCCHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNGV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEHHHHHHHHH
LRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNIT
HHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEE
VRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDESA
EEEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECEEEEECCCE
MLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRLG
EEEECCCCCCCHHEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC
IKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQR
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEECCCHHHHHHHHHHHH
KIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKNFKIEPLYYGDVDNIIYHKE
HHHHCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEECC
GFVSILPNDKMDGFFIAKLKKC
CEEEECCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]