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The map label for this gene is yvcD [H]

Identifier: 152977377

GI number: 152977377

Start: 3757282

End: 3758793

Strand: Reverse

Name: yvcD [H]

Synonym: Bcer98_3702

Alternate gene names: 152977377

Gene position: 3758793-3757282 (Counterclockwise)

Preceding gene: 152977378

Following gene: 152977376

Centisome position: 91.97

GC content: 34.79

Gene sequence:

>1512_bases
ATGGGGAAAAATCAAAGAATATATAAGGAGAACGGACAAGTTATCTCTTTTCATCAATTAGCAGACTTCTTTTATAAAAA
AGGGATGAAAGCGTATCAAGGGCATAAATTAGAAGAAGCGATTAAATATTTTCGTAGAGCGGCACAAAATAAGAAAGAGC
CGTTTATTTTATGCCAATTAGCAACTGTGCTATCTGAGGTTGGTGAATACCAAGAGTCGAATCAAATTCTTCTGAAATTG
ATTCGTTCTCATTCTGAGATTGAACAGTGCTATTATTTTATCGCGAATAATTATGCCTATCTTGGCTTATTTCAACAGGC
AAAAAAATATGCGGAGAAATATTTAGAAATTGCAACTGAAAAGGAATTTGTAGAAGATACGTTGGAATTACTTGAAATTA
TGGAAGAGGAATCATTGGATGCTGAAGAGATGGAAGATGAAGATGAACTGATTGTGATGCAGGAAGAAGCAAATCGTTAT
ATTCGTAATGGTCAATTAGAAGAAGCGATTGCTACTTTAGAAATTGTGACGAAGGATTATCCGGAATTTTGGTCCGGTTA
TAATAATTTAGCAATTGCTCATTTTCAGTCGGGGAACGTAGATCAGGCGCTGAAGTTAACAGAAATGATTTTAGAGAAAA
ATCCCGGCAATATGCATGCTCTTTGTAACACGCTTATTTTTCTATACTCAATTGGAGAACATAAGCAAGTAGAAGCGCTA
GCGGAGCAAATGAAATCTGTATATCCAATTTCATTTGAACATCGATTAAAATTAGGGACGACGTTTGCAACTATCGGTTA
TTTTGCTCATGCTTATAAATGGTTAAAGTTATTGAAGCGTCAAGGATATGATGGTGATGTTAGCTTTTATTATTGGTTTG
CATACGCTTCTTATATGGTAAAAGACTATCATACAGCAGAGAAGATGTGGCAGTCAGTTGTAGAGTTACACCCTGATAAA
AAAGGAAAAGAACCTTGGAATGCCTTGAATTTAGCTGATGAAGGGCAAAAAGTTTTATTCGAAGAATTGCGCAAAACATT
TCAAGAAAGTGCAACATTAGAAGAGCAAATGTTAGCTCTATATTTAATGAATGAATTGAAAACGCCTGAAAAAATTGGCT
TTTTCTTTGATATTGTACAGGCGAAGAACGGTGTTCCTATTGTGTCGGAAATTGCAAAATACTTCTTCTTACTTGGCAGT
CATAAGAGTATTCCGTCTGAACTAAAGCCATTTGAACAATGTATTCGAATTGCGGATATCTTATATAACTATACAAATAA
AGAAGATGAATTAATTGAAGAGTGCTTACATTTTTGGTTCTGCACTTTCATACGTTTATATACTTCCGATACGGCTTTTA
CAAATATATTTGGATGGTCAGCGGCAATTGAATATATTGTGCGCGGTGAGAAAAAAAATAAAATGACACAGGCCGAACTA
GGAAATATATATAATGTATCTGTGGCTACGCTAAGAAAATATGTGCAAGCAGTAAGACGTACACATGCATAG

Upstream 100 bases:

>100_bases
GAAATAATTGATTATAATATACTGTTTTGTTTTTTTTAGAATCGTTTATACTTAAAGATAGAATAATGCGTGAGCGTAGA
AAACAAAAACTGGAGGATTT

Downstream 100 bases:

>100_bases
GCATATCACTAGGAAAAAGCAAATGCTAACAGTATAATGAGGGTAAGTTGTAGGTATGAATAGGAGTGAATAGTGTGTCA
GAAGAAAAAATTTATGATGT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MGKNQRIYKENGQVISFHQLADFFYKKGMKAYQGHKLEEAIKYFRRAAQNKKEPFILCQLATVLSEVGEYQESNQILLKL
IRSHSEIEQCYYFIANNYAYLGLFQQAKKYAEKYLEIATEKEFVEDTLELLEIMEEESLDAEEMEDEDELIVMQEEANRY
IRNGQLEEAIATLEIVTKDYPEFWSGYNNLAIAHFQSGNVDQALKLTEMILEKNPGNMHALCNTLIFLYSIGEHKQVEAL
AEQMKSVYPISFEHRLKLGTTFATIGYFAHAYKWLKLLKRQGYDGDVSFYYWFAYASYMVKDYHTAEKMWQSVVELHPDK
KGKEPWNALNLADEGQKVLFEELRKTFQESATLEEQMLALYLMNELKTPEKIGFFFDIVQAKNGVPIVSEIAKYFFLLGS
HKSIPSELKPFEQCIRIADILYNYTNKEDELIEECLHFWFCTFIRLYTSDTAFTNIFGWSAAIEYIVRGEKKNKMTQAEL
GNIYNVSVATLRKYVQAVRRTHA

Sequences:

>Translated_503_residues
MGKNQRIYKENGQVISFHQLADFFYKKGMKAYQGHKLEEAIKYFRRAAQNKKEPFILCQLATVLSEVGEYQESNQILLKL
IRSHSEIEQCYYFIANNYAYLGLFQQAKKYAEKYLEIATEKEFVEDTLELLEIMEEESLDAEEMEDEDELIVMQEEANRY
IRNGQLEEAIATLEIVTKDYPEFWSGYNNLAIAHFQSGNVDQALKLTEMILEKNPGNMHALCNTLIFLYSIGEHKQVEAL
AEQMKSVYPISFEHRLKLGTTFATIGYFAHAYKWLKLLKRQGYDGDVSFYYWFAYASYMVKDYHTAEKMWQSVVELHPDK
KGKEPWNALNLADEGQKVLFEELRKTFQESATLEEQMLALYLMNELKTPEKIGFFFDIVQAKNGVPIVSEIAKYFFLLGS
HKSIPSELKPFEQCIRIADILYNYTNKEDELIEECLHFWFCTFIRLYTSDTAFTNIFGWSAAIEYIVRGEKKNKMTQAEL
GNIYNVSVATLRKYVQAVRRTHA
>Mature_502_residues
GKNQRIYKENGQVISFHQLADFFYKKGMKAYQGHKLEEAIKYFRRAAQNKKEPFILCQLATVLSEVGEYQESNQILLKLI
RSHSEIEQCYYFIANNYAYLGLFQQAKKYAEKYLEIATEKEFVEDTLELLEIMEEESLDAEEMEDEDELIVMQEEANRYI
RNGQLEEAIATLEIVTKDYPEFWSGYNNLAIAHFQSGNVDQALKLTEMILEKNPGNMHALCNTLIFLYSIGEHKQVEALA
EQMKSVYPISFEHRLKLGTTFATIGYFAHAYKWLKLLKRQGYDGDVSFYYWFAYASYMVKDYHTAEKMWQSVVELHPDKK
GKEPWNALNLADEGQKVLFEELRKTFQESATLEEQMLALYLMNELKTPEKIGFFFDIVQAKNGVPIVSEIAKYFFLLGSH
KSIPSELKPFEQCIRIADILYNYTNKEDELIEECLHFWFCTFIRLYTSDTAFTNIFGWSAAIEYIVRGEKKNKMTQAELG
NIYNVSVATLRKYVQAVRRTHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58812; Mature: 58681

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKNQRIYKENGQVISFHQLADFFYKKGMKAYQGHKLEEAIKYFRRAAQNKKEPFILCQL
CCCCCCEECCCCCEEEHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHH
ATVLSEVGEYQESNQILLKLIRSHSEIEQCYYFIANNYAYLGLFQQAKKYAEKYLEIATE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KEFVEDTLELLEIMEEESLDAEEMEDEDELIVMQEEANRYIRNGQLEEAIATLEIVTKDY
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCC
PEFWSGYNNLAIAHFQSGNVDQALKLTEMILEKNPGNMHALCNTLIFLYSIGEHKQVEAL
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
AEQMKSVYPISFEHRLKLGTTFATIGYFAHAYKWLKLLKRQGYDGDVSFYYWFAYASYMV
HHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
KDYHTAEKMWQSVVELHPDKKGKEPWNALNLADEGQKVLFEELRKTFQESATLEEQMLAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLMNELKTPEKIGFFFDIVQAKNGVPIVSEIAKYFFLLGSHKSIPSELKPFEQCIRIADI
HHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LYNYTNKEDELIEECLHFWFCTFIRLYTSDTAFTNIFGWSAAIEYIVRGEKKNKMTQAEL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHCCHHHHHC
GNIYNVSVATLRKYVQAVRRTHA
CCEEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKNQRIYKENGQVISFHQLADFFYKKGMKAYQGHKLEEAIKYFRRAAQNKKEPFILCQL
CCCCCEECCCCCEEEHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHH
ATVLSEVGEYQESNQILLKLIRSHSEIEQCYYFIANNYAYLGLFQQAKKYAEKYLEIATE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
KEFVEDTLELLEIMEEESLDAEEMEDEDELIVMQEEANRYIRNGQLEEAIATLEIVTKDY
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCC
PEFWSGYNNLAIAHFQSGNVDQALKLTEMILEKNPGNMHALCNTLIFLYSIGEHKQVEAL
HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
AEQMKSVYPISFEHRLKLGTTFATIGYFAHAYKWLKLLKRQGYDGDVSFYYWFAYASYMV
HHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
KDYHTAEKMWQSVVELHPDKKGKEPWNALNLADEGQKVLFEELRKTFQESATLEEQMLAL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YLMNELKTPEKIGFFFDIVQAKNGVPIVSEIAKYFFLLGSHKSIPSELKPFEQCIRIADI
HHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LYNYTNKEDELIEECLHFWFCTFIRLYTSDTAFTNIFGWSAAIEYIVRGEKKNKMTQAEL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHCCHHHHHC
GNIYNVSVATLRKYVQAVRRTHA
CCEEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]