Definition | Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome. |
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Accession | NC_009674 |
Length | 4,087,024 |
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The map label for this gene is yobQ [H]
Identifier: 152977328
GI number: 152977328
Start: 3710979
End: 3711701
Strand: Reverse
Name: yobQ [H]
Synonym: Bcer98_3653
Alternate gene names: 152977328
Gene position: 3711701-3710979 (Counterclockwise)
Preceding gene: 152977329
Following gene: 152977327
Centisome position: 90.82
GC content: 37.34
Gene sequence:
>723_bases ATGCAAATATGTAAAGAGATTGTTGCGGAACGCCGAACGTATAGAGAGATTGAACATACACATGCTCACAGTCATGCTCA GTTAATTTTACCTCTTCAAGGAGAACTTTCTATAAAAGCTGGGTTACAAAATCTTCTCATTGACCAGAAGACGTTATTTT TTGTCCCTCCAGAATGCACCCATACGTTTCATTCTGCTGTACGCAATGAATTTTTAGTGCTGGATATTCCTCATTTCATG ATTCCTGAAGGAAATATGCAAAGGACAGGGATTTCACATGTGTTCGATAAACAGTGGAAAAGTATTCGCTATCTCATTTT ACATGAAATAGAACAAGGACAATCTTCCTTGAACGAACTCTATCCATATATTTCGCGCTGCTTATTCAAGGAGCGACATC CGAAGTCTATTCAATATATTCATGAACATTATGATAAAAATATAACTGTGCAACAATTAGCGGCGCTTGAGCACTATAAT CGTTCTTATTATTCGGAGTGGTTTCTAAAAGAAACGGGAAAATCTCCATCGGTATACATACAGGAAGTTCGCCTTAATAA AGCAAAAGAATTATTGCGAAATACAAATTTATCCATTATGCATATTGCCATACAGGTTGGGTTAGAGCATCAGTCTTCTT TAACTCGCTTGTTCCAAAAGTATGAGGGGATGTCACCGAGTCAATATCGCAAAGGTGATAGGGACGATGTAACGAATATA TGA
Upstream 100 bases:
>100_bases ATTTGAAAAAACATTAAAAAGTAGTGCAGACCGTGCGATTGGTTTGCACTACTTTTTTTGATATGATAAATCCAAATATG AAAAGGGAGAAGAAGAGCAT
Downstream 100 bases:
>100_bases CATAGAGATAAAAATAGCTGATTTTTGGTGAAAAATCTTTTATTTCATTTGTTTAAAATGTAGGTAGGTATTTCAAAAAT TGGAGGGAGCATATATGGCA
Product: helix-turn-helix domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI
Sequences:
>Translated_240_residues MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI >Mature_240_residues MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECTHTFHSAVRNEFLVLDIPHFM IPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNELYPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYN RSYYSEWFLKETGKSPSVYIQEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI
Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790559, Length=95, Percent_Identity=34.7368421052632, Blast_Score=61, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013096 - InterPro: IPR011051 - InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR018060 - InterPro: IPR014710 [H]
Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 28288; Mature: 28288
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECT CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHH HTFHSAVRNEFLVLDIPHFMIPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNEL HHHHHHHHCCEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYNRSYYSEWFLKETGKSPSVYI HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH QEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI HHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MQICKEIVAERRTYREIEHTHAHSHAQLILPLQGELSIKAGLQNLLIDQKTLFFVPPECT CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCHHH HTFHSAVRNEFLVLDIPHFMIPEGNMQRTGISHVFDKQWKSIRYLILHEIEQGQSSLNEL HHHHHHHHCCEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YPYISRCLFKERHPKSIQYIHEHYDKNITVQQLAALEHYNRSYYSEWFLKETGKSPSVYI HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH QEVRLNKAKELLRNTNLSIMHIAIQVGLEHQSSLTRLFQKYEGMSPSQYRKGDRDDVTNI HHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]