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The map label for this gene is sufD [H]

Identifier: 152977257

GI number: 152977257

Start: 3638167

End: 3639459

Strand: Reverse

Name: sufD [H]

Synonym: Bcer98_3578

Alternate gene names: 152977257

Gene position: 3639459-3638167 (Counterclockwise)

Preceding gene: 152977258

Following gene: 152977256

Centisome position: 89.05

GC content: 39.75

Gene sequence:

>1293_bases
ATGACAATCGGTACATTACCTTTCGATCAAGAAACAATCCGTCAGCGCGCAAGCGAAGTAAACGAAGCTGCTTGGTTGAC
TGAGTTCCGCTTACAAGCTCTTGCACAAGCAACTGAACTTCCAATGCCAACGCCTGATAAAACAAAAATCGATAAATGGG
ACTTTATCGGAAAAGGCACTACTCTTAAGCAAGAGTCTGTAAGTTCTTTAGCGGAACTTCCAGAAGCAGTGAAAAACTTA
ATTGATGAAAATAATAACGTACTAGTCGGACGCACTGGCACAAAAGCATTTGTTTCTTTAGCGGACGAAGCAAAAGAAAA
AGGTGTTATTTTCACAGATATTGTAACGGCTGCAACTGAGCATGCTGAATTAGTACAAAAGTACTTAATGAAAGATGGCG
TGAAAGTGGATGAGCATCGTTTAACAGCACTTCACGCAGCATTAATCAATGGCGGGGCATTTGTATATGTTCCAAAAAAC
GTTGTACTTGAAACACCACTTCAAGCGGTATTCTTAGTAGATGGCGAAGAAGCAAACTTATATAACCATGTATTATTCGT
AGCTGATGAAAACAGTTCTGCAACTTACGTGGAAAACTATGTAGCAGATGAAAATGTTACTGGTATTGCAAATATCGTAG
CAGAAGTAATCGTAGAACAAGGTGCACAGGTGAAATTTGGTGCAGTGGATCTATTAGCGAAAGGTGTAACAACGTATGTA
AATCGTCGCGGTGTTGTAGGACGTGATGCTCGTATTGAATGGGCATTAGGTCTTATGAACGACGGTGATACAATTTCAGA
GAACGTAACGAACTTAATGGGTGACGGATCATTTGCTGATACAAAAACAGTAACAATCGGTCGCGGCAATCAAACACAAA
ACTTTACAACAAAAGTTGTTCATTTTGGTAAACACTCTGAAGGTTATATTTTAAAACACGGTGTACAAAAAGATAGCGCA
ACTTCTATCTTTAACGGAATTGGTAAGATTGAACACGGTGCATCTAAATCAAATGCACAACAATCTTCTCGCGTTCTTAT
GTTAAGTGAAAAAGCACGCGGTGATGCAAATCCAATTCTTCTAATTGATGAAGATGATGTAATGGCAGGTCACGCAGCTT
CTGTTGGCCGCGTAGATCCAGTACAACTATACTACTTAATGAGTCGTGGTATTCCGAAGAAAGAAGCGGAACGCTTAGTC
ATCCATGGATTCTTAGCACCTGTAGTAAATGAGCTTCCAATTGAAGGAGTAAAAACACAGCTTGTTGAGGTAATTGAAAG
GAAAGTTCGCTAA

Upstream 100 bases:

>100_bases
TGCTCAACGTCTAGAAGCTGAAGGTTATGACTGGATCAAAAAAGAATTAGGTATTGAAGACGAAACAGCAGAGCAAGAAG
CGTAAGAGAGGAGCATAAAT

Downstream 100 bases:

>100_bases
TGAATATTCATGAAATACGCAAACAGTTTCCAATTCTTGATCAAAAAGTGAACGGCAAACAACTTGTTTATTTCGATAGT
GCAGCAACTTCTCAAAAACC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIDKWDFIGKGTTLKQESVSSLAELPEAVKNL
IDENNNVLVGRTGTKAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKN
VVLETPLQAVFLVDGEEANLYNHVLFVADENSSATYVENYVADENVTGIANIVAEVIVEQGAQVKFGAVDLLAKGVTTYV
NRRGVVGRDARIEWALGLMNDGDTISENVTNLMGDGSFADTKTVTIGRGNQTQNFTTKVVHFGKHSEGYILKHGVQKDSA
TSIFNGIGKIEHGASKSNAQQSSRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPVQLYYLMSRGIPKKEAERLV
IHGFLAPVVNELPIEGVKTQLVEVIERKVR

Sequences:

>Translated_430_residues
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIDKWDFIGKGTTLKQESVSSLAELPEAVKNL
IDENNNVLVGRTGTKAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKN
VVLETPLQAVFLVDGEEANLYNHVLFVADENSSATYVENYVADENVTGIANIVAEVIVEQGAQVKFGAVDLLAKGVTTYV
NRRGVVGRDARIEWALGLMNDGDTISENVTNLMGDGSFADTKTVTIGRGNQTQNFTTKVVHFGKHSEGYILKHGVQKDSA
TSIFNGIGKIEHGASKSNAQQSSRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPVQLYYLMSRGIPKKEAERLV
IHGFLAPVVNELPIEGVKTQLVEVIERKVR
>Mature_429_residues
TIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIDKWDFIGKGTTLKQESVSSLAELPEAVKNLI
DENNNVLVGRTGTKAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNV
VLETPLQAVFLVDGEEANLYNHVLFVADENSSATYVENYVADENVTGIANIVAEVIVEQGAQVKFGAVDLLAKGVTTYVN
RRGVVGRDARIEWALGLMNDGDTISENVTNLMGDGSFADTKTVTIGRGNQTQNFTTKVVHFGKHSEGYILKHGVQKDSAT
SIFNGIGKIEHGASKSNAQQSSRVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDPVQLYYLMSRGIPKKEAERLVI
HGFLAPVVNELPIEGVKTQLVEVIERKVR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=443, Percent_Identity=25.5079006772009, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1787971, Length=260, Percent_Identity=25.7692307692308, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46838; Mature: 46707

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIDKWDFIGKGT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC
TLKQESVSSLAELPEAVKNLIDENNNVLVGRTGTKAFVSLADEAKEKGVIFTDIVTAATE
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEHHHHHHHH
HAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNVVLETPLQAVFLVDGEEANL
HHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEECCCEEEEEEECCCCCE
YNHVLFVADENSSATYVENYVADENVTGIANIVAEVIVEQGAQVKFGAVDLLAKGVTTYV
EEEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
NRRGVVGRDARIEWALGLMNDGDTISENVTNLMGDGSFADTKTVTIGRGNQTQNFTTKVV
HCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEE
HFGKHSEGYILKHGVQKDSATSIFNGIGKIEHGASKSNAQQSSRVLMLSEKARGDANPIL
EECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEECCCCCCCCCEE
LIDEDDVMAGHAASVGRVDPVQLYYLMSRGIPKKEAERLVIHGFLAPVVNELPIEGVKTQ
EECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVEVIERKVR
HHHHHHHHCC
>Mature Secondary Structure 
TIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIDKWDFIGKGT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC
TLKQESVSSLAELPEAVKNLIDENNNVLVGRTGTKAFVSLADEAKEKGVIFTDIVTAATE
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEHHHHHHHH
HAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNVVLETPLQAVFLVDGEEANL
HHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEECCCEEEEEEECCCCCE
YNHVLFVADENSSATYVENYVADENVTGIANIVAEVIVEQGAQVKFGAVDLLAKGVTTYV
EEEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
NRRGVVGRDARIEWALGLMNDGDTISENVTNLMGDGSFADTKTVTIGRGNQTQNFTTKVV
HCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEE
HFGKHSEGYILKHGVQKDSATSIFNGIGKIEHGASKSNAQQSSRVLMLSEKARGDANPIL
EECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEECCCCCCCCCEE
LIDEDDVMAGHAASVGRVDPVQLYYLMSRGIPKKEAERLVIHGFLAPVVNELPIEGVKTQ
EECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVEVIERKVR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]