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The map label for this gene is ycfU [H]

Identifier: 152969667

GI number: 152969667

Start: 1265206

End: 1266414

Strand: Direct

Name: ycfU [H]

Synonym: KPN_01113

Alternate gene names: 152969667

Gene position: 1265206-1266414 (Clockwise)

Preceding gene: 152969664

Following gene: 152969668

Centisome position: 23.8

GC content: 60.79

Gene sequence:

>1209_bases
ATGGATGACATGTACCAACCTGCCGCACTCTTTATCGGCCTACGCTATATGCGCGGGCGCGCAGCCGACCGCTTCGGTCG
TTTCGTCTCCTGGCTCTCAACTATCGGTATTACGCTTGGCGTAATGGCGCTGGTGACGGTCCTGTCGGTGATGAACGGCT
TTGAACGCGAGCTGCAAAACAACATCCTGGGGCTGATGCCACAGGCCATTCTTAGCGCCAAACAGGGTTCGGTGAACCCT
CAGCAACTGCCGGAGCGCGAAGCGAAACTTAATGGGGTAACCCGCGTAGCGCCGATCACCACCGGCGACGTGGTGCTGCA
GAGCGCGCGCAGCGTGGCGGTCGGGGTTATGCTGGGCATTGATCCGGCGCAGAACGATCCCCTGACTCCATACCTGGTGA
ACGTCAAACAGAGCGATCTGCAGGCGGGAAAATATAACGTTATTCTCGGCGAGCAACTGGCGGGCCAGCTGGGGGTTAAT
CGCGGCGATAAAATTCGCGTGATGGTTCCTTCCGCGAGTCAGTTTACGCCGATGGGCCGCGTGCCGAGCCAGCGTCTGTT
CACGGTCATCGGCACCTTCGCCGCCAACAGCGAAGTCGATGGCTATCAGATGCTGACCAACATCGACGACGCCTCCCGTC
TGATGCGCTATCCGCTGGGGAATATCACCGGCTGGCGCCTGTGGCTGGATAAACCGCTGCAGGTCGACACCCTGAGTCAG
CAGACGCTGCCGCCGGGAACTCAGTGGCAGGACTGGCGCGAGCGCAAAGGCGAACTGTTCCAGGCGGTGCGCATGGAGAA
AAATATGATGGGCCTGCTGCTGAGCCTGATCGTCGCCGTCGCGGCCTTCAACATTATTACCTCGCTGGGGATGATGGTGA
TGGAGAAGCAGGGCGAAGTGGCGATCCTCCAGACCCAGGGGCTGACGCCGAGGCAGATTATGGCCGTCTTTATGGTGCAG
GGGGCCAGCGCCGGGATCGTCGGCGCGCTGCTGGGAGCGGTGCTTGGCGCCCTGTTGGCCAGCCAGCTGAATAATTTAAT
GCCGATCATCGGCGCCTTCCTTGACGGCGCGGCGCTGCCGGTGGCGATTGAGCCGCTGCAGGTCATTGTTATCGCCCTGG
TGGCGATGGTGCTGGCCCTGTTGTCTACGTTGTACCCTTCCTGGCGCGCTGCCGCCACCCAACCCGCTGAGGCTTTACGT
TATGAATAA

Upstream 100 bases:

>100_bases
ACTTGGTTTTTAGGGTTATTGCTAATAAAGTCGTCATGTATCAGTCGTTTACGCTGCCTCTAATCGCTTATATACTCGGG
CATCGGCTATCAGCAACCAG

Downstream 100 bases:

>100_bases
GATCCTGCTGCAATGCGACAACCTGTGCAAACGCTATCAGGAAGGCAATGTGCAAACCGATGTCCTGCACAATGTCAGCT
TCAGCATTGGTGAAGGCGAG

Product: outer membrane-specific lipoprotein transporter subunit LolC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MDDMYQPAALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSAKQGSVNP
QQLPEREAKLNGVTRVAPITTGDVVLQSARSVAVGVMLGIDPAQNDPLTPYLVNVKQSDLQAGKYNVILGEQLAGQLGVN
RGDKIRVMVPSASQFTPMGRVPSQRLFTVIGTFAANSEVDGYQMLTNIDDASRLMRYPLGNITGWRLWLDKPLQVDTLSQ
QTLPPGTQWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGMMVMEKQGEVAILQTQGLTPRQIMAVFMVQ
GASAGIVGALLGAVLGALLASQLNNLMPIIGAFLDGAALPVAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQPAEALR
YE

Sequences:

>Translated_402_residues
MDDMYQPAALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSAKQGSVNP
QQLPEREAKLNGVTRVAPITTGDVVLQSARSVAVGVMLGIDPAQNDPLTPYLVNVKQSDLQAGKYNVILGEQLAGQLGVN
RGDKIRVMVPSASQFTPMGRVPSQRLFTVIGTFAANSEVDGYQMLTNIDDASRLMRYPLGNITGWRLWLDKPLQVDTLSQ
QTLPPGTQWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGMMVMEKQGEVAILQTQGLTPRQIMAVFMVQ
GASAGIVGALLGAVLGALLASQLNNLMPIIGAFLDGAALPVAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQPAEALR
YE
>Mature_402_residues
MDDMYQPAALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSAKQGSVNP
QQLPEREAKLNGVTRVAPITTGDVVLQSARSVAVGVMLGIDPAQNDPLTPYLVNVKQSDLQAGKYNVILGEQLAGQLGVN
RGDKIRVMVPSASQFTPMGRVPSQRLFTVIGTFAANSEVDGYQMLTNIDDASRLMRYPLGNITGWRLWLDKPLQVDTLSQ
QTLPPGTQWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGMMVMEKQGEVAILQTQGLTPRQIMAVFMVQ
GASAGIVGALLGAVLGALLASQLNNLMPIIGAFLDGAALPVAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQPAEALR
YE

Specific function: Part of an ATP-dependent transport system lolCDE responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprote

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787360, Length=399, Percent_Identity=90.2255639097744, Blast_Score=697, Evalue=0.0,
Organism=Escherichia coli, GI1787362, Length=416, Percent_Identity=29.0865384615385, Blast_Score=142, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43534; Mature: 43534

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDMYQPAALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILGLMPQAILSAKQGSVNPQQLPEREAKLNGVTRVAPITTGDVVLQSARSVAVGVMLGI
HHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHEEHEEEC
DPAQNDPLTPYLVNVKQSDLQAGKYNVILGEQLAGQLGVNRGDKIRVMVPSASQFTPMGR
CCCCCCCCCCEEEECCHHHCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
VPSQRLFTVIGTFAANSEVDGYQMLTNIDDASRLMRYPLGNITGWRLWLDKPLQVDTLSQ
CCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
QTLPPGTQWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGMMVMEKQGEV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
AILQTQGLTPRQIMAVFMVQGASAGIVGALLGAVLGALLASQLNNLMPIIGAFLDGAALP
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQPAEALRYE
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCC
>Mature Secondary Structure
MDDMYQPAALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NILGLMPQAILSAKQGSVNPQQLPEREAKLNGVTRVAPITTGDVVLQSARSVAVGVMLGI
HHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCEEEECCCHHHHHHHHHHHHHEEHEEEC
DPAQNDPLTPYLVNVKQSDLQAGKYNVILGEQLAGQLGVNRGDKIRVMVPSASQFTPMGR
CCCCCCCCCCEEEECCHHHCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
VPSQRLFTVIGTFAANSEVDGYQMLTNIDDASRLMRYPLGNITGWRLWLDKPLQVDTLSQ
CCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
QTLPPGTQWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGMMVMEKQGEV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
AILQTQGLTPRQIMAVFMVQGASAGIVGALLGAVLGALLASQLNNLMPIIGAFLDGAALP
EEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQPAEALRYE
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]