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The map label for this gene is ycdO [H]

Identifier: 152969602

GI number: 152969602

Start: 1196106

End: 1197239

Strand: Direct

Name: ycdO [H]

Synonym: KPN_01046

Alternate gene names: 152969602

Gene position: 1196106-1197239 (Clockwise)

Preceding gene: 152969601

Following gene: 152969603

Centisome position: 22.5

GC content: 57.41

Gene sequence:

>1134_bases
ATGATCATGATGATTCATTTTCGCCGTAATGCGCTGCGGGTGACCGTGGCCGCGCTGCTCAGCTCTGCATTCGGTGCTCA
GGCTGCGGATATCCCGCAGGTCAAAGTCACCGTCAACGACAAGCAGTGCGAGCCGATGCAGGTGACCGTTAACGCGGGTA
AAACCCAGTTTATTATTCAGAACCACAGCCAGAAAGCGCTGGAGTGGGAGATTCTGAAAGGGGTGATGGTGGTGGAAGAG
CGCGAAAACATCGCGCCGGGCTTTACTCAGAAGCTCACCGCGAACCTGCAGCCGGGCGAATATGACATGACCTGTGGCCT
GCTCACCAACCCGAAAGGCAAACTGATCGTCACCGGCGCCGCCACCAAAGACGCGGCGAAAGCGGATGCGGTGCTGAGCC
TCGGCGACGCGATCACCGCCTATAAAGCCTATGTGACGGCGGAAACCGCGCAGCTGGTTAGCGGCACCAAAGCCTTTACC
GACGCGGTGAAAGCCGGCGATATCGAAAAAGCGAAAGCGCTGTACGCCCCGACGCGTCAGCATTACGAGCGCATCGAGCC
CATTGCCGAGCTGTTCTCTGACCTTGACGGCAGCATCGACGCCCGCGAAGACGACTTCGAGAAAAAAGCGGAAGATCCGA
AATTTACCGGTTTCCACCGTCTGGAAAAAGCGCTGTTTGGCGATAACAGCGTCAAAGGGATGGAAAAATATGCCGATCAG
CTGAACAGCGATGTGCTGGAGCTGCAAAAGCGTATCAGCGAGCTGGCGTTCCCGCCGTCAAAAGTCGTGGGCGGCGCGGC
AGGATTAATTGAGGAAGTCGCGGCCAGCAAGATCAGCGGTGAAGAAGATCGCTACAGCCATACCGATCTGTGGGACTTCC
AGGCCAACATTGACGGCGCGCAGAAAATTGTCGACCTGCTGCGCCCGCAGCTGCAAAAAGAGAACAGCGCGCTGCTGGCG
AAAGTGGACGCCAACTTTAAGAAAGTGGACAGCATCCTCAGCAAATATCGCACCAAAGACGGCTTCGAGACCTACGATAA
GCTGACCACCGCCGACCGTAATGCGCTGAAAGGGCCGATCACCACCCTGGCGGAAGATCTGGCTCAGCTGCGCGGGATCC
TGGGGCTGGACTAA

Upstream 100 bases:

>100_bases
GGTGCTGTTTGCCCTGCCGCCGCGGAATAATACCACTGCCTCGCGGGCTGCCTGACCGGGCGCTGCGAGCTTATAAGCGA
CACTCTACTTACCGAAAGGG

Downstream 100 bases:

>100_bases
GTCGATGGCACAGCAGAAACCCCACGACGTGAACGAGCCGTCACGTCGTCGCTTACTGAAAGGGATCGGCGCGCTTGGCG
GCGCGCTGGCCATCACCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MIMMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEE
RENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFT
DAVKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQ
LNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLA
KVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD

Sequences:

>Translated_377_residues
MIMMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEE
RENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFT
DAVKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQ
LNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLA
KVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD
>Mature_377_residues
MIMMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEE
RENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFT
DAVKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQ
LNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLA
KVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=375, Percent_Identity=86.9333333333333, Blast_Score=682, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41256; Mature: 41256

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQ
CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEE
NHSQKALEWEILKGVMVVEERENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGA
CCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEC
ATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCHHH
HYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQ
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
LNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGA
HCHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHH
QKIVDLLRPQLQKENSALLAKVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPI
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCHH
TTLAEDLAQLRGILGLD
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIMMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQ
CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEE
NHSQKALEWEILKGVMVVEERENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGA
CCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEC
ATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCHHH
HYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQ
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
LNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGA
HCHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHH
QKIVDLLRPQLQKENSALLAKVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPI
HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCHH
TTLAEDLAQLRGILGLD
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]