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The map label for this gene is ycdB [H]

Identifier: 152969603

GI number: 152969603

Start: 1197244

End: 1198527

Strand: Direct

Name: ycdB [H]

Synonym: KPN_01047

Alternate gene names: 152969603

Gene position: 1197244-1198527 (Clockwise)

Preceding gene: 152969602

Following gene: 152969604

Centisome position: 22.53

GC content: 60.51

Gene sequence:

>1284_bases
ATGGCACAGCAGAAACCCCACGACGTGAACGAGCCGTCACGTCGTCGCTTACTGAAAGGGATCGGCGCGCTTGGCGGCGC
GCTGGCCATCACCGGCGGCTGCCCGGTAGCGCATGCGGCAAAAGCGGAAAGTTCCCCGGGGACGCTCACACCCGACGCGC
GCCAGGAAAAGCAGCCATTCTATGGCCGGCATCAGGCGGGCATTCTGACGCCGCAGCAGGCTTCGATGATGCTGGTGGCC
TTCGATGTGCTGGCGGCTGATAAAGCCGACCTCGAGCGGCTGTTTCGACTGCTGACCCAGCGTATCGCCTTTTTAACCCA
GGGCGGCCCGGCGCCGGACACGCCGAATCCGCGGCTGCCGCCGATGGATTCCGGCATCCTGGGGCCGTGGATTGCGCCAG
ATAACCTGACCATCACCGTCTCGGTCGGCCATTCGCTATTTGATGAGCGCTTTGGCCTGGCGGATAAAGCACCGAAAAAG
CTGCAGCCGATGACCCGCTTCCCCAACGATTCGCTGGATGCCGCGCTGTGCCATGGCGACCTGCTGCTGCAGATCTGCGC
CAATACTCAGGATACGGTGATCCACGCCCTGCGTGATGTCATCAAACATACGCCGGATCTGCTGAGCGTGCGCTGGAAGC
GGGAAGGGTTTATCTCCGACAGCGCGGCGCGTAGCAAAGGCAAAGAGACCCCCATCAACCTGTTGGGGTTTAAGGACGGC
ACCGCTAACCCGGCGAGCCACGACAGCGCGCTGATGGATAAGGTAGTGTGGGTGACAGCCGATCAGGACGAGCCGGCCTG
GACCGTGGGCGGCAGCTATCAGGCGGCGCGCATCATCCAGTTTCACGTGGAGTTCTGGGATCGGACGCCGCTCAAGGAGC
AGCAGACGATCTTTGGTCGCGACAAGCACACCGGTGCGCCGCTGGGGATGAAAAACGAACACGATACCCCGGATTACAGT
AAAGATCCTAACGGCGAAGTCATTGCGCTGGATAGCCATATTCGTCTGGCCAATCCCCGCACGCCGGAAACCCAGTCCAG
CCTGATGATGCGCCGCGGCTACAGCTATTCGCTGGGGGTTACTAACGCCGGACAACTGGATATGGGGCTGTTATTCGTTT
GCTATCAGCACGATCTGGAAAAGGGTTTTCTGACGGTGCAGAAACGGCTTAACGGCGAGGCGCTGGAGGAGTATGTCAAA
CCGATCGGCGGGGGCTACTTCTTTGTTTTACCCGGCGTAGTTGATGAAAAACACTATCTGGGAGAGTCGCTGCTGCAGGC
CTGA

Upstream 100 bases:

>100_bases
AAGCTGACCACCGCCGACCGTAATGCGCTGAAAGGGCCGATCACCACCCTGGCGGAAGATCTGGCTCAGCTGCGCGGGAT
CCTGGGGCTGGACTAAGTCG

Downstream 100 bases:

>100_bases
TACCGACCCTGCCCGTAAGGGCAGGGCGTTTTCTGCTGTTTTTCTCATTTTTCTTATATTTCCTGCCATGTGTTATATTT
CTGTAATACAAATGACCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MAQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPFYGRHQAGILTPQQASMMLVA
FDVLAADKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLPPMDSGILGPWIAPDNLTITVSVGHSLFDERFGLADKAPKK
LQPMTRFPNDSLDAALCHGDLLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDG
TANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGRDKHTGAPLGMKNEHDTPDYS
KDPNGEVIALDSHIRLANPRTPETQSSLMMRRGYSYSLGVTNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVK
PIGGGYFFVLPGVVDEKHYLGESLLQA

Sequences:

>Translated_427_residues
MAQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPFYGRHQAGILTPQQASMMLVA
FDVLAADKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLPPMDSGILGPWIAPDNLTITVSVGHSLFDERFGLADKAPKK
LQPMTRFPNDSLDAALCHGDLLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDG
TANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGRDKHTGAPLGMKNEHDTPDYS
KDPNGEVIALDSHIRLANPRTPETQSSLMMRRGYSYSLGVTNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVK
PIGGGYFFVLPGVVDEKHYLGESLLQA
>Mature_426_residues
AQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPFYGRHQAGILTPQQASMMLVAF
DVLAADKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLPPMDSGILGPWIAPDNLTITVSVGHSLFDERFGLADKAPKKL
QPMTRFPNDSLDAALCHGDLLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDGT
ANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGRDKHTGAPLGMKNEHDTPDYSK
DPNGEVIALDSHIRLANPRTPETQSSLMMRRGYSYSLGVTNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKP
IGGGYFFVLPGVVDEKHYLGESLLQA

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=427, Percent_Identity=83.1381733021077, Blast_Score=741, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 46815; Mature: 46684

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPF
CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCCCHHHCCCC
YGRHQAGILTPQQASMMLVAFDVLAADKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLP
CCCCCCCCCCCCHHCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PMDSGILGPWIAPDNLTITVSVGHSLFDERFGLADKAPKKLQPMTRFPNDSLDAALCHGD
CCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCCCCHHCCHHHCCCCCCCCHHHHHHH
LLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDG
HHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCC
TANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGR
CCCCCCCHHHHHHEEEEEECCCCCCCEEECCCCCCEEEEEEEEHHHCCCCCCHHHHHCCC
DKHTGAPLGMKNEHDTPDYSKDPNGEVIALDSHIRLANPRTPETQSSLMMRRGYSYSLGV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCCHHHHHHHHCCCCEEECC
TNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFVLPGVVDEKHYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
GESLLQA
HHHHHCC
>Mature Secondary Structure 
AQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPF
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCCCHHHCCCC
YGRHQAGILTPQQASMMLVAFDVLAADKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLP
CCCCCCCCCCCCHHCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PMDSGILGPWIAPDNLTITVSVGHSLFDERFGLADKAPKKLQPMTRFPNDSLDAALCHGD
CCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCCCCHHCCHHHCCCCCCCCHHHHHHH
LLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDG
HHHHHHCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCC
TANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGR
CCCCCCCHHHHHHEEEEEECCCCCCCEEECCCCCCEEEEEEEEHHHCCCCCCHHHHHCCC
DKHTGAPLGMKNEHDTPDYSKDPNGEVIALDSHIRLANPRTPETQSSLMMRRGYSYSLGV
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCCHHHHHHHHCCCCEEECC
TNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFVLPGVVDEKHYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
GESLLQA
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]