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The map label for this gene is ycbB [H]

Identifier: 152969509

GI number: 152969509

Start: 1075460

End: 1077193

Strand: Direct

Name: ycbB [H]

Synonym: KPN_00952

Alternate gene names: 152969509

Gene position: 1075460-1077193 (Clockwise)

Preceding gene: 152969508

Following gene: 152969510

Centisome position: 20.23

GC content: 58.25

Gene sequence:

>1734_bases
ATGGCATTTGCTCCGCTGTTCAATGTCCAGGCCGCAGAGCCTGAAGTCGTACCAGGTGATAGCTCCGCTACGCCTGGAGA
GCTTTCCGTCGCGCTGTCGCAAAGCGACGGGCAATCGCCGGCGGTCGCGAAGCTGGCCGGTGAGCAGCCGCTGTCGATGG
AAGCCGCGGCGAACAGTCGCGCCCAGATCGAAGCGCTATTGCCGGCTGGCTACAAACCCGTCTTTATGAATCCGCTGGTC
TCGCTATACGCCGCCAGCGATATGAAACCGATGTGGGAAAACCGCGAGGCGGTGCAGGCGTTCCAGCAGCAGCTGGCGGA
GATCGCCATCGCCGGTTTTCAGCCGCAGTTTACCACCTGGGTCAGTCTGCTGACCGATCCTGCCGTCAGCGGTATGGCGC
GCGATGTGGTGTTGTCTGATGCCATGATGGGCTATCTGCACTTTATCAGCGGCATCCCCACCCAGGGGACCCGCTGGTTA
TATAGCTCGACACCGTACAAGATGGCGACCCCGCCGCTGTCGGTGATTAACCAGTGGCAGCTGGCGCTGGATAATGGCTC
CCTGCCGGCGTTTATCGCCGGCCTGGCGCCGCGTCATCCGCAGTATGAGGCCATGCACCAGTCGCTGCTGGCGCTGGTGG
CTGATTCACGTCCATGGCCGCAGATGACCGGTAGCGGCTCGCTGCGTCCGGGAGAATGGAGCAATGATATCGGCGCGCTG
CGCGAGATCCTCCAGCGTACCGGGATGCTGAAAAATTCCGCCAATATCGTTCTGCCCGGCGACGTGGTGAGTCCTTCGGC
GAAGAAAAAGAGCAAGCCCGCGGCGCGCGGTGTGTACGATCGCCAGCTGGTGGAGGGCGTTAAGCGCTTTCAGGCCATGC
AGGGGCTGGGGGCGGATGGGGTCATCGGCCAATCCACCCGTGACTGGCTCAATGTCTCATCGGCGCAGCGCGCTGGCGTG
CTGGCGCTGAACATTCAGCGTCTACGTCTGCTGCCAGGCAAACTATCGACTGGTATCATGGTGAATATTCCCGCGTTTTC
GCTGGTCTATTACCAGGACGGCAGTCAGGTGCTGGCCTCGCGGGTGATCGTCGGACGTCCAGACCGCAAGACGCCGATGA
TGAGCAGCGCGCTGAACAACGTAGTGGTCAATCCGCCGTGGAACGTACCGCCCACCCTGGCGCGCAAAGATATTCTGCCG
AAGGTGCGTAATAATCCTGGCTATCTGGAGCAGCATGGCTACACCGTGATGCGCGGCTGGAACAGTAAAGAGACCATCGA
TCCTTACCGGGTTGACTGGTCAACCATCACCGAGAACAATTTACCGTTCCGTTTTCAGCAGGCGCCTGGGGCACGTAATT
CACTGGGGCGTTACAAGTTTAATATGCCGAGTTCGGATGCTATCTATCTGCACGATACGCCGAACCATAATCTGTTTCAG
AAGGATGTCCGTGCGCTCAGTTCCGGCTGCGTCAGGGTCAATAAAGCCTCGGAGCTGGCCAATATGCTGCTGCAGGACGC
GGGCTGGAATGACACGCGCATTTCCGACGCCCTGAAGCAGGGGGATACGCGCTATGTCAATATTCGGCAAAATATACCGG
TGAATTTATATTACTTAACGGCGTTTGTGGACGCTGATGGACGTACACAATATCGAACAGATATTTACAATTACGATATC
ACCGCGCGATCCAGCGCACAAATTCTGACGAAAGCGGAACAATTAATCAGGTAA

Upstream 100 bases:

>100_bases
CACGAATTTGTGGGCGGCAATGTGTGACAACAGGGGGCAAGGGATGTTGCTTAAGAAACGGTATGGTCGTCCATTGTCAG
CGCTCAGTCTGAGCCTGGCA

Downstream 100 bases:

>100_bases
ATGAAGTAGTTCAATGGATTTTGTTGTCCTAGCACTGGGTAAAAAAGGGCGCTGCACCTCTGCAGCGCCCGATTTTCCTG
GGGTGAGGCTGCCTTGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRAQIEALLPAGYKPVFMNPLV
SLYAASDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVSGMARDVVLSDAMMGYLHFISGIPTQGTRWL
YSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGAL
REILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV
LALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILP
KVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQ
KDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYDI
TARSSAQILTKAEQLIR

Sequences:

>Translated_577_residues
MAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRAQIEALLPAGYKPVFMNPLV
SLYAASDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVSGMARDVVLSDAMMGYLHFISGIPTQGTRWL
YSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGAL
REILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV
LALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILP
KVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQ
KDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYDI
TARSSAQILTKAEQLIR
>Mature_576_residues
AFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRAQIEALLPAGYKPVFMNPLVS
LYAASDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVSGMARDVVLSDAMMGYLHFISGIPTQGTRWLY
SSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGALR
EILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVL
ALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPK
VRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQK
DVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYDIT
ARSSAQILTKAEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=600, Percent_Identity=75.6666666666667, Blast_Score=930, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 63392; Mature: 63261

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSR
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHCCCC
AQIEALLPAGYKPVFMNPLVSLYAASDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTW
CEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
VSLLTDPAVSGMARDVVLSDAMMGYLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQ
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHCCEE
LALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGAL
EEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
REILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADG
HHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCC
VIGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLAS
CCCCCCHHHHCCCCHHHCCEEEEEHHHHHCCCCCCCCCEEEECCCEEEEEEECCHHHHHH
RVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGW
HHHCCCCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCHHHCCCCCCCHHCCEEEEECC
NSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQ
CCCCCCCCEECCHHEECCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHH
KDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLT
HHHHHHHHCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEE
AFVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR
EEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSR
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHCCCC
AQIEALLPAGYKPVFMNPLVSLYAASDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTW
CEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
VSLLTDPAVSGMARDVVLSDAMMGYLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQ
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHCCEE
LALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGAL
EEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
REILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADG
HHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCC
VIGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLAS
CCCCCCHHHHCCCCHHHCCEEEEEHHHHHCCCCCCCCCEEEECCCEEEEEEECCHHHHHH
RVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGW
HHHCCCCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCHHHCCCCCCCHHCCEEEEECC
NSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQ
CCCCCCCCEECCHHEECCCCCCEEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHH
KDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLT
HHHHHHHHCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCEEEEEEE
AFVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR
EEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]