| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is dnaJ [H]
Identifier: 150398579
GI number: 150398579
Start: 3595879
End: 3597006
Strand: Direct
Name: dnaJ [H]
Synonym: Smed_3390
Alternate gene names: 150398579
Gene position: 3595879-3597006 (Clockwise)
Preceding gene: 150398578
Following gene: 150398584
Centisome position: 95.08
GC content: 62.59
Gene sequence:
>1128_bases ATGAAACGTGATCTTTACGAAACGCTTGGCGTTCAGAAAAGCGCGGACGAAAAGGAGCTGAAGAGCGCCTTTCGCAAGCT CGCGATGAAATATCATCCGGACAGGAATCCCGGAGACAATGAAGCGGAAAAGTCATTCAAGGAAATCAACGAAGCCTACG AGACGCTGAAGGATCCGCAGAAACGCGCGGCCTATGACCGCTATGGCCATGCGGCCTTCGAGCAGGGCGGCATGGGCAAC GGCTTCGCCGGTGGTGGCGCGCACGGCTTCTCCGATATTTTCGAGGACATCTTCGGCGAGATGATGGGTGGCCGGCAGCG CCGCTCGTCCGGTGGACGCGAGCGCGGCGCGGACCTGCGTTACAACATGGAAATCTCGCTCGAGGAGGCCTATTCCGGCA AGACGGCGCAGATCCGCGTGCCTACGTCGATCACCTGCGACGTCTGCACCGGTACGGGCGCCAAGCCGGGGACCAGCCCG AAGACCTGCGGCACCTGCCAAGGCACCGGCCGCGTCCGCGCCGCCCAAGGCTTCTTCTCGATCGAGCGAACCTGCCCGAC CTGCGGCGGCCGCGGACAGACGATCACCGACCCGTGCACCAAGTGCCATGGTCAGGGCCGCGTCGTGGAGGAGCGGACGC TCTCGGTCAACATTCCGGCCGGTATCGAGGACGGCACGCGCATCCGGCTTTCCGGCGAGGGCGAGGCTGGCCTTCGCGGC GGCCCGGCTGGCGACCTCTACATCTTTCTCTCGGTCAAGCCGCACGAATTCTACCAGCGTGACGGCGCGGATCTCTACTG CGCCGTGCCGATCTCGATGACGACGGCAACGCTCGGCGGCAAGTTCGACGTCACGACGCTCGACGGAACCAAATCTCGCG TCACGGTGCCTGAAGGCACACAGGCCGGCAAGCAGTTCCGCCTCAAGGGCAAGGGCATGCCGGTGCTGCGTTCCAGCCAG ATGGGCGATCTCTATATTCAGATCCAGATCGAGACACCGCAGAAGCTCACGAAGCGGCAACGTGAGTTGCTGCAGGAGTT CGAGCAGATCTCCTCCAAGGAGAACAATCCCGAATCGGCAGGCTTCTTCTCCCGCATGAAGGGTTTCTTCGACACGTTGA GCGAGTAG
Upstream 100 bases:
>100_bases GCTTAAAGGTTTACTAAATCCTGTGGCAAGATAATCAGGCAGCCGTCGGATTCCTCGCGCTGGCAAGCCCTGTCGCTGAC AACAGGACGATCTTTGAAGC
Downstream 100 bases:
>100_bases GGCAGTCTCTCAGCCTGCCCGCACATCCCAGTCCTATCACCATTTACGGAGGAACTTGGGAGGGTTTCCGTGCCCGTTCG CTTTTTCGATCGGGCGGTGA
Product: chaperone protein DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MKRDLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDNEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMGN GFAGGGAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLRYNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSP KTCGTCQGTGRVRAAQGFFSIERTCPTCGGRGQTITDPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIRLSGEGEAGLRG GPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTATLGGKFDVTTLDGTKSRVTVPEGTQAGKQFRLKGKGMPVLRSSQ MGDLYIQIQIETPQKLTKRQRELLQEFEQISSKENNPESAGFFSRMKGFFDTLSE
Sequences:
>Translated_375_residues MKRDLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDNEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMGN GFAGGGAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLRYNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSP KTCGTCQGTGRVRAAQGFFSIERTCPTCGGRGQTITDPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIRLSGEGEAGLRG GPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTATLGGKFDVTTLDGTKSRVTVPEGTQAGKQFRLKGKGMPVLRSSQ MGDLYIQIQIETPQKLTKRQRELLQEFEQISSKENNPESAGFFSRMKGFFDTLSE >Mature_375_residues MKRDLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDNEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGMGN GFAGGGAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLRYNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSP KTCGTCQGTGRVRAAQGFFSIERTCPTCGGRGQTITDPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIRLSGEGEAGLRG GPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTATLGGKFDVTTLDGTKSRVTVPEGTQAGKQFRLKGKGMPVLRSSQ MGDLYIQIQIETPQKLTKRQRELLQEFEQISSKENNPESAGFFSRMKGFFDTLSE
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=355, Percent_Identity=36.6197183098592, Blast_Score=223, Evalue=3e-58, Organism=Homo sapiens, GI205360840, Length=355, Percent_Identity=36.6197183098592, Blast_Score=222, Evalue=3e-58, Organism=Homo sapiens, GI5031741, Length=343, Percent_Identity=37.9008746355685, Blast_Score=189, Evalue=3e-48, Organism=Homo sapiens, GI4504511, Length=341, Percent_Identity=36.950146627566, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI194328760, Length=340, Percent_Identity=34.4117647058824, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI194328758, Length=340, Percent_Identity=34.4117647058824, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI7706495, Length=350, Percent_Identity=32, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI194328762, Length=310, Percent_Identity=31.6129032258064, Blast_Score=133, Evalue=3e-31, Organism=Homo sapiens, GI5453690, Length=400, Percent_Identity=27.25, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI6631085, Length=367, Percent_Identity=28.0653950953678, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI39204547, Length=372, Percent_Identity=24.1935483870968, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI9558755, Length=119, Percent_Identity=44.5378151260504, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI23503241, Length=111, Percent_Identity=43.2432432432432, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI27151736, Length=104, Percent_Identity=45.1923076923077, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI88501736, Length=104, Percent_Identity=45.1923076923077, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI47777312, Length=112, Percent_Identity=43.75, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI21553335, Length=110, Percent_Identity=41.8181818181818, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI201862587, Length=69, Percent_Identity=55.0724637681159, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI201862518, Length=69, Percent_Identity=55.0724637681159, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI56549115, Length=69, Percent_Identity=55.0724637681159, Blast_Score=83, Evalue=5e-16, Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=54.5454545454545, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=54.5454545454545, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI24308127, Length=77, Percent_Identity=49.3506493506493, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI29126218, Length=65, Percent_Identity=53.8461538461538, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=52.3076923076923, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI194306642, Length=106, Percent_Identity=43.3962264150943, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI194306640, Length=106, Percent_Identity=43.3962264150943, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI68077166, Length=118, Percent_Identity=38.9830508474576, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI68077168, Length=118, Percent_Identity=38.9830508474576, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI217035105, Length=78, Percent_Identity=46.1538461538462, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI22749377, Length=69, Percent_Identity=50.7246376811594, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI72534740, Length=105, Percent_Identity=40.9523809523809, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI56687498, Length=68, Percent_Identity=45.5882352941176, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1786197, Length=380, Percent_Identity=56.8421052631579, Blast_Score=419, Evalue=1e-118, Organism=Escherichia coli, GI1787235, Length=358, Percent_Identity=32.9608938547486, Blast_Score=163, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17553096, Length=352, Percent_Identity=35.2272727272727, Blast_Score=184, Evalue=6e-47, Organism=Caenorhabditis elegans, GI17553098, Length=352, Percent_Identity=35.2272727272727, Blast_Score=184, Evalue=7e-47, Organism=Caenorhabditis elegans, GI17507263, Length=341, Percent_Identity=32.5513196480938, Blast_Score=150, Evalue=7e-37, Organism=Caenorhabditis elegans, GI212645553, Length=351, Percent_Identity=32.1937321937322, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17563890, Length=358, Percent_Identity=29.3296089385475, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17534355, Length=386, Percent_Identity=26.9430051813472, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI115532378, Length=99, Percent_Identity=42.4242424242424, Blast_Score=88, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17554644, Length=89, Percent_Identity=48.314606741573, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI86563276, Length=109, Percent_Identity=42.2018348623853, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17568643, Length=66, Percent_Identity=53.030303030303, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538236, Length=115, Percent_Identity=39.1304347826087, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115532476, Length=68, Percent_Identity=47.0588235294118, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17554874, Length=64, Percent_Identity=43.75, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=354, Percent_Identity=37.0056497175141, Blast_Score=192, Evalue=1e-49, Organism=Saccharomyces cerevisiae, GI6321094, Length=381, Percent_Identity=35.6955380577428, Blast_Score=159, Evalue=7e-40, Organism=Saccharomyces cerevisiae, GI6323870, Length=360, Percent_Identity=35.5555555555556, Blast_Score=156, Evalue=5e-39, Organism=Saccharomyces cerevisiae, GI6323119, Length=390, Percent_Identity=29.2307692307692, Blast_Score=140, Evalue=5e-34, Organism=Saccharomyces cerevisiae, GI6324252, Length=465, Percent_Identity=23.2258064516129, Blast_Score=88, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324321, Length=68, Percent_Identity=58.8235294117647, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6322194, Length=103, Percent_Identity=40.7766990291262, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324103, Length=69, Percent_Identity=52.1739130434783, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=126, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320888, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI45552813, Length=384, Percent_Identity=31.7708333333333, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI45549272, Length=384, Percent_Identity=31.7708333333333, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI45552811, Length=384, Percent_Identity=31.7708333333333, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24646562, Length=348, Percent_Identity=35.9195402298851, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24646560, Length=348, Percent_Identity=35.9195402298851, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24646558, Length=348, Percent_Identity=35.9195402298851, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI24646556, Length=348, Percent_Identity=35.9195402298851, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI21357547, Length=348, Percent_Identity=35.9195402298851, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI20129487, Length=339, Percent_Identity=34.5132743362832, Blast_Score=169, Evalue=4e-42, Organism=Drosophila melanogaster, GI24584014, Length=339, Percent_Identity=34.5132743362832, Blast_Score=169, Evalue=4e-42, Organism=Drosophila melanogaster, GI19920464, Length=352, Percent_Identity=32.1022727272727, Blast_Score=166, Evalue=4e-41, Organism=Drosophila melanogaster, GI85726398, Length=358, Percent_Identity=28.7709497206704, Blast_Score=134, Evalue=9e-32, Organism=Drosophila melanogaster, GI28574949, Length=355, Percent_Identity=26.1971830985915, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI24658562, Length=368, Percent_Identity=29.3478260869565, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24658555, Length=368, Percent_Identity=29.3478260869565, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI18858081, Length=354, Percent_Identity=27.9661016949153, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI24654066, Length=104, Percent_Identity=42.3076923076923, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI24654070, Length=104, Percent_Identity=42.3076923076923, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI24654068, Length=104, Percent_Identity=42.3076923076923, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI24654072, Length=104, Percent_Identity=42.3076923076923, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=53.125, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28574723, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24668523, Length=65, Percent_Identity=50.7692307692308, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24762799, Length=115, Percent_Identity=33.0434782608696, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24651439, Length=65, Percent_Identity=43.0769230769231, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=43.0769230769231, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=43.0769230769231, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI21355073, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24668492, Length=69, Percent_Identity=39.1304347826087, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 41009; Mature: 41009
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2 ; PS00637 DNAJ_CXXCXGXG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDNEAEKSFKEINEAYETLKDPQ CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHH KRAAYDRYGHAAFEQGGMGNGFAGGGAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLR HHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEE YNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSPKTCGTCQGTGRVRAAQGFFS EEEEEEEHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHH IERTCPTCGGRGQTITDPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIRLSGEGEAGLRG HHCCCCCCCCCCCCCCCHHHHHCCCCCEEECEEEEEECCCCCCCCCEEEEECCCCCCCCC GPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTATLGGKFDVTTLDGTKSRVTVPEGT CCCCCEEEEEEECCHHHHHCCCCCEEEEEECEEEEEECCCEEEEEEECCCCCEEECCCCC QAGKQFRLKGKGMPVLRSSQMGDLYIQIQIETPQKLTKRQRELLQEFEQISSKENNPESA CCCCEEEECCCCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHH GFFSRMKGFFDTLSE HHHHHHHHHHHHHCC >Mature Secondary Structure MKRDLYETLGVQKSADEKELKSAFRKLAMKYHPDRNPGDNEAEKSFKEINEAYETLKDPQ CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCHH KRAAYDRYGHAAFEQGGMGNGFAGGGAHGFSDIFEDIFGEMMGGRQRRSSGGRERGADLR HHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEE YNMEISLEEAYSGKTAQIRVPTSITCDVCTGTGAKPGTSPKTCGTCQGTGRVRAAQGFFS EEEEEEEHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCHHH IERTCPTCGGRGQTITDPCTKCHGQGRVVEERTLSVNIPAGIEDGTRIRLSGEGEAGLRG HHCCCCCCCCCCCCCCCHHHHHCCCCCEEECEEEEEECCCCCCCCCEEEEECCCCCCCCC GPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTATLGGKFDVTTLDGTKSRVTVPEGT CCCCCEEEEEEECCHHHHHCCCCCEEEEEECEEEEEECCCEEEEEEECCCCCEEECCCCC QAGKQFRLKGKGMPVLRSSQMGDLYIQIQIETPQKLTKRQRELLQEFEQISSKENNPESA CCCCEEEECCCCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHH GFFSRMKGFFDTLSE HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]