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The map label for this gene is pcaC [H]

Identifier: 150396067

GI number: 150396067

Start: 901594

End: 902373

Strand: Direct

Name: pcaC [H]

Synonym: Smed_0843

Alternate gene names: 150396067

Gene position: 901594-902373 (Clockwise)

Preceding gene: 150396066

Following gene: 150396068

Centisome position: 23.84

GC content: 62.69

Gene sequence:

>780_bases
ATGAAACGCCTAATCGCCCCGCTCATAGGAGTTATGATGATGACCGCCTCGAACGCAGGGGCTCAACAGCCCAATGTTGA
AGGTCGCCGTTTCTCGCCCGATCAGGTTCGCTCGGTGGCGCCCGCCCTCGAGCAGTATACGCAGCAACGCTTGTATGGCG
ACGTCTGGCAGCGCCCCGGCCTCAATCGGCGCGATCGCAGCCTTGTGACGATCGCCGCGCTGATTGCGCGGGGAGAAGCC
CCGGCTCTCACCTACTACGCCGATCAAGCGCTTGAGAACGGAGTGAGGCCTTCCGAGATCTCGGAGACGATCACGCATCT
TGCCTATTATTCCGGCTGGGGAAAAGCCATGGCCACGATCGGTCCCGTGAGCGAAGCCTTCGCCAAGCGCGGCATCAGTC
AGGATCAGCTCGCTGCCGTCGAATCCACGCCGTTGCCGCTGGACGAAGAGGCGGAAACACAACGCGCAACCACCGTCGGC
AACCAGTTCGGCAGCGTTGCCCCCGGCCTCGTTCAGTACACGACGGACTATCTTTTCCGCGACCTATGGCTGCGCCCCGG
CCTGGCGCCACGCGATCGCAGCCTTGTCACGGTCGCCGCACTGATCTCGGTTGGCCAGGTCGAGCAGATCACCTTTCACC
TGAACAAAGCCCTGGACAATGGGCTGACCGAAGAGCAGGCCGCCGAAGTCATCACCCATCTGGCTTTCTACGCAGGCTGG
CCCAACGCGATGTCGGCGCTGCCGGTGGCGAAGGCCGTCTTTGAAAAGCGGCGCGGCTAA

Upstream 100 bases:

>100_bases
CCGAGAGCCAGTTCGACTACAGCTAAGAGGTCTCCTCCCGCTCGTATTTGAACACCTGATTGCCCTCTCGACAACCAGCC
ACGAATTCCAGGAGACCCCG

Downstream 100 bases:

>100_bases
TCTGGCGGTGACAAGGATGGCAAGCTCGTGGACTGGCTCGAGCATGTGTCAGACGAGCAGTATGCAGGGTGATGCCATGC
CCGATGCTCGAAGGATCTTC

Product: carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKRLIAPLIGVMMMTASNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEA
PALTYYADQALENGVRPSEISETITHLAYYSGWGKAMATIGPVSEAFAKRGISQDQLAAVESTPLPLDEEAETQRATTVG
NQFGSVAPGLVQYTTDYLFRDLWLRPGLAPRDRSLVTVAALISVGQVEQITFHLNKALDNGLTEEQAAEVITHLAFYAGW
PNAMSALPVAKAVFEKRRG

Sequences:

>Translated_259_residues
MKRLIAPLIGVMMMTASNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEA
PALTYYADQALENGVRPSEISETITHLAYYSGWGKAMATIGPVSEAFAKRGISQDQLAAVESTPLPLDEEAETQRATTVG
NQFGSVAPGLVQYTTDYLFRDLWLRPGLAPRDRSLVTVAALISVGQVEQITFHLNKALDNGLTEEQAAEVITHLAFYAGW
PNAMSALPVAKAVFEKRRG
>Mature_259_residues
MKRLIAPLIGVMMMTASNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEA
PALTYYADQALENGVRPSEISETITHLAYYSGWGKAMATIGPVSEAFAKRGISQDQLAAVESTPLPLDEEAETQRATTVG
NQFGSVAPGLVQYTTDYLFRDLWLRPGLAPRDRSLVTVAALISVGQVEQITFHLNKALDNGLTEEQAAEVITHLAFYAGW
PNAMSALPVAKAVFEKRRG

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 28300; Mature: 28300

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLIAPLIGVMMMTASNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LNRRDRSLVTIAALIARGEAPALTYYADQALENGVRPSEISETITHLAYYSGWGKAMATI
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GPVSEAFAKRGISQDQLAAVESTPLPLDEEAETQRATTVGNQFGSVAPGLVQYTTDYLFR
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DLWLRPGLAPRDRSLVTVAALISVGQVEQITFHLNKALDNGLTEEQAAEVITHLAFYAGW
HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PNAMSALPVAKAVFEKRRG
CHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRLIAPLIGVMMMTASNAGAQQPNVEGRRFSPDQVRSVAPALEQYTQQRLYGDVWQRPG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LNRRDRSLVTIAALIARGEAPALTYYADQALENGVRPSEISETITHLAYYSGWGKAMATI
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GPVSEAFAKRGISQDQLAAVESTPLPLDEEAETQRATTVGNQFGSVAPGLVQYTTDYLFR
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DLWLRPGLAPRDRSLVTVAALISVGQVEQITFHLNKALDNGLTEEQAAEVITHLAFYAGW
HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PNAMSALPVAKAVFEKRRG
CHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]