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The map label for this gene is ycbB [H]

Identifier: 150396039

GI number: 150396039

Start: 878050

End: 879381

Strand: Direct

Name: ycbB [H]

Synonym: Smed_0815

Alternate gene names: 150396039

Gene position: 878050-879381 (Clockwise)

Preceding gene: 150396038

Following gene: 150396040

Centisome position: 23.22

GC content: 60.66

Gene sequence:

>1332_bases
ATGTCGAAAAAAAACGGAATTGATGCTTTCTCGCGCCGCGCATTTCTGCGTTCGGCCGCAACCTTCGGTGCCGCCGCATG
GGCGGGCGCCGCCAGCGCCCAGGATGCGCTGAACGAAATCATCAATTCGCCGCGCCGCGGCTCCTGGGACGACCAGTTCG
ACGCAAAGGCTTCGCGTACGGCTACGGCGGTACTGTCGAACACGCCAGTCTTCGGCCCCGAAACGATTGCGCTTCTGCAG
CAGGCGATCCTGGATTACCAGCAGATCGCAGCCGCCGGAGGCTGGCCTATGGTCAATCCCGCGAGCACCCAAAGGCTCGA
ACTCGGCGTTAACGATCCTGCCGTTCAGCAATTGCGCCAGCGTCTGATGATCTCGGGCGATCTGCCGCAATCGGCGGGTA
TTTCCCCTTCCTTCGATTCCTATGTCGATGGTGCTGTCAAGCGCTTCCAGGCACGTCATGGCCTGCCGGCGGACGGCGTC
ATCGGCGAATACAGCCTGAAGGCTCTGAACGTCGACGCCTCGACCCGGCTTGCCCAGCTCGAGACCAACCTGGTGCGGCT
TCAGTCGATGTCGGGCGATCTCGGCCGGCGCTACGTCATGGTCAACATTCCGGCAGCCTATATCGAGGCGGTGGAGAACG
GCCGGGTGGCGCTGCGCCATACGGCTATCGTCGGCAAGATCGATCGCCAGTCGCCGATTCTCAATTCAAAGATTTACGAG
GTCATCCTCAACCCCTATTGGACGGCGCCGCGCTCGATCATCCAGAAAGATATCATGCCGCTGATGCGTAAGGATCCGAC
TTATCTCGAGCGCAATGCGATCCGTCTCCTCGACGGCAATGGCAACGAAGTGTCGCCGGAAACCATCGACTGGCAGGCCG
AGAAGGCGCCGAACCTTATGTTCCGCCAGGATCCCGGCAAGATCAACGCGATGTCTTCGACGAAGATCAATTTCCATAAC
GAGCATGCCGTCTATATGCACGACACCCCGCAGCAGGGCCTGTTCAACAAGCTGATGCGCTTCGAATCCTCCGGTTGCGT
CCGTGTGCAGAACGTTCGCGATCTATCCACCTGGCTGCTCAAGGAAACGCCCGGCTGGTCGCGCCAGCAGATCGAGGGTA
CGATCAAGTCCGGCGTCAACACGCCGATCAAGCTTGCCGAAGAGGTCCCGGTCTATTTCACCTATATAACCGCCTGGTCG
GCGAAGGACCGCGTCGTCCAGTTCCGCGACGATATCTACCAGCGCGACGGCGCGGCGGAGCTTGCGCTGCAGACGACGAC
GGGCATCGAGCAATCGGCTGGTCCGATCGACGCGGACGCCTTGCCGCAATAA

Upstream 100 bases:

>100_bases
CGGGATGCGACTTGCAATGAATGCGAAGACGTAAGGCGCATCACATGATGCGCTTTAGGGCTAGGGCAGCGCGCTTCTGG
CGCAATGATACGGTGGGACT

Downstream 100 bases:

>100_bases
GCAAAACTTGCATTCTGCCATCGAAAACCGCGCCTTCGTCGAAGGCGCGGTTTTCGTTTTCATGGGGCTGCACCAACCCG
GCGCGGCGGATGGCGGAAAT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSKKNGIDAFSRRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIALLQ
QAILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLPADGV
IGEYSLKALNVDASTRLAQLETNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYE
VILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHN
EHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTYITAWS
AKDRVVQFRDDIYQRDGAAELALQTTTGIEQSAGPIDADALPQ

Sequences:

>Translated_443_residues
MSKKNGIDAFSRRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIALLQ
QAILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLPADGV
IGEYSLKALNVDASTRLAQLETNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYE
VILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHN
EHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTYITAWS
AKDRVVQFRDDIYQRDGAAELALQTTTGIEQSAGPIDADALPQ
>Mature_442_residues
SKKNGIDAFSRRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIALLQQ
AILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLPADGVI
GEYSLKALNVDASTRLAQLETNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYEV
ILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHNE
HAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTYITAWSA
KDRVVQFRDDIYQRDGAAELALQTTTGIEQSAGPIDADALPQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=381, Percent_Identity=34.3832020997375, Blast_Score=200, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 48874; Mature: 48743

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNGIDAFSRRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
ATAVLSNTPVFGPETIALLQQAILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQ
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHH
RLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLPADGVIGEYSLKALNVDASTRLAQL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
ETNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYE
HHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHH
VILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLM
HHHCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCE
FRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLL
EECCCCCEEEECCCEEEECCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHH
KETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTYITAWSAKDRVVQFRDDIYQRDGAAE
HCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHH
LALQTTTGIEQSAGPIDADALPQ
EEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKKNGIDAFSRRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
ATAVLSNTPVFGPETIALLQQAILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQ
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHH
RLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLPADGVIGEYSLKALNVDASTRLAQL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
ETNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYE
HHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHH
VILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLM
HHHCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCE
FRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLL
EECCCCCEEEECCCEEEECCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHH
KETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTYITAWSAKDRVVQFRDDIYQRDGAAE
HCCCCCCHHHHHHHHHCCCCCCHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHH
LALQTTTGIEQSAGPIDADALPQ
EEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]