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The map label for this gene is psd [H]

Identifier: 150395947

GI number: 150395947

Start: 777084

End: 777782

Strand: Direct

Name: psd [H]

Synonym: Smed_0723

Alternate gene names: 150395947

Gene position: 777084-777782 (Clockwise)

Preceding gene: 150395946

Following gene: 150395948

Centisome position: 20.55

GC content: 62.8

Gene sequence:

>699_bases
ATGAGTTTGATCGACACAGTGCGCAACACGCTTGTACCGGTCCACAGGGAAGGCTACCGCTTCATCGCGATTTTCTTTGT
CGTTTCGCTTGCCCTCGGCTTTCTCTGGGAGCCGCTGATGTGGATCGGCTTCCTTCTGACCGCTTGGTGCGCATATTTCT
TCCGCGATCCGGAGCGGATGACCCCGATCGACGACGATCTCGTCATCAGCCCAGCGGATGGCACCGTATCCTCGGTCGCC
ACCGTGACGCCGCCGGAGGAACTGGGTCTCGGATCGGAGCCGATGCTGCGCATCTCGGTTTTCATGAATGTCTTCAACGG
CCATGTGAACCGTGCGCCGATGAGCGGCACGGTTCGCCGCATCGCCTACCGTGCCGGCAAGTTCGTGAACGCCGAGCTGG
ACAAGGCGAGCCAGGAAAACGAGCGAAACGGCCTCGTTCTCGAGACGAAACATGGTCAGATCGGCGTCGTTCAGATCGCC
GGACTCGTCGCCCGCCGCATCCTCTGCTGGACAAGGGAGAGCGCATCGCTCGAGGCCGGGGAGCGCTTCGGACTCATCCG
CTTCGGGTCGCGTCTCGATGTGTTCCTTCCCGCCGGTGCAGAGCCGCGTGTGACGGTGGGCCAGACAGCCACCGCCGGCG
AGACAGTGATCGCAGAATTCGGATCGGCGAAGGGGCCGGTCATCAGCCGCCGCGCGTGA

Upstream 100 bases:

>100_bases
GGATTTCGCTGCGCGTCCATCCATCCGGGCCGTTCGACATTGCCGACCTGTCCAATTCGCGCTAGTTCACGTCGCAAAGC
AAATATGGAGAGTAGAGTTC

Downstream 100 bases:

>100_bases
GGACAGGTCATGGAAGAACCCCGCCACGAAAAATCCGCAGGGAACCAGGAAGTCGCCGCTGAGCATGCCCAGGCGGCTGG
ATCGCAGGATACCGGTTCGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSLIDTVRNTLVPVHREGYRFIAIFFVVSLALGFLWEPLMWIGFLLTAWCAYFFRDPERMTPIDDDLVISPADGTVSSVA
TVTPPEELGLGSEPMLRISVFMNVFNGHVNRAPMSGTVRRIAYRAGKFVNAELDKASQENERNGLVLETKHGQIGVVQIA
GLVARRILCWTRESASLEAGERFGLIRFGSRLDVFLPAGAEPRVTVGQTATAGETVIAEFGSAKGPVISRRA

Sequences:

>Translated_232_residues
MSLIDTVRNTLVPVHREGYRFIAIFFVVSLALGFLWEPLMWIGFLLTAWCAYFFRDPERMTPIDDDLVISPADGTVSSVA
TVTPPEELGLGSEPMLRISVFMNVFNGHVNRAPMSGTVRRIAYRAGKFVNAELDKASQENERNGLVLETKHGQIGVVQIA
GLVARRILCWTRESASLEAGERFGLIRFGSRLDVFLPAGAEPRVTVGQTATAGETVIAEFGSAKGPVISRRA
>Mature_231_residues
SLIDTVRNTLVPVHREGYRFIAIFFVVSLALGFLWEPLMWIGFLLTAWCAYFFRDPERMTPIDDDLVISPADGTVSSVAT
VTPPEELGLGSEPMLRISVFMNVFNGHVNRAPMSGTVRRIAYRAGKFVNAELDKASQENERNGLVLETKHGQIGVVQIAG
LVARRILCWTRESASLEAGERFGLIRFGSRLDVFLPAGAEPRVTVGQTATAGETVIAEFGSAKGPVISRRA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 25455; Mature: 25324

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIDTVRNTLVPVHREGYRFIAIFFVVSLALGFLWEPLMWIGFLLTAWCAYFFRDPERM
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPIDDDLVISPADGTVSSVATVTPPEELGLGSEPMLRISVFMNVFNGHVNRAPMSGTVRR
CCCCCCEEEECCCCCHHCEEEECCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
IAYRAGKFVNAELDKASQENERNGLVLETKHGQIGVVQIAGLVARRILCWTRESASLEAG
HHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCC
ERFGLIRFGSRLDVFLPAGAEPRVTVGQTATAGETVIAEFGSAKGPVISRRA
CCCCEEEECCCEEEEECCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SLIDTVRNTLVPVHREGYRFIAIFFVVSLALGFLWEPLMWIGFLLTAWCAYFFRDPERM
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPIDDDLVISPADGTVSSVATVTPPEELGLGSEPMLRISVFMNVFNGHVNRAPMSGTVRR
CCCCCCEEEECCCCCHHCEEEECCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
IAYRAGKFVNAELDKASQENERNGLVLETKHGQIGVVQIAGLVARRILCWTRESASLEAG
HHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCC
ERFGLIRFGSRLDVFLPAGAEPRVTVGQTATAGETVIAEFGSAKGPVISRRA
CCCCEEEECCCEEEEECCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]