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The map label for this gene is ygaU [C]

Identifier: 150395945

GI number: 150395945

Start: 773082

End: 774800

Strand: Direct

Name: ygaU [C]

Synonym: Smed_0721

Alternate gene names: 150395945

Gene position: 773082-774800 (Clockwise)

Preceding gene: 150395943

Following gene: 150395946

Centisome position: 20.44

GC content: 65.62

Gene sequence:

>1719_bases
ATGATTAAGAATAAGGCCAGCTGGGTGGCCCTTGGCGTCCTGGCAATCGCAACCGCATTGATGGTTTTTGTGGTTCAGCC
AAACCTGCGCGAAAGCGACAAGGAGGCGGTGGCTCAATCCGGGACAGGCGGCCAGCCTGCCCGACCGGCGGCAACAGACG
CCGGAAGCTCGTCCGCCGTCCCGCTAGGCACAGCTGCGAAACAGGCGGCAGCTGGCTCCCCGAATCAAGTCGCATCGTCT
GCGTCTGATCCGGCGACGGCCTGGGTGGTTCCGGGGTTCGACGTGCTGCGCGTCGAACCGGACGGCTCGACGGTCGTCGC
GGGCAGGGCCCAGCCGAATACGAAGCTCGAAATTCTGAGCGGCGACGCGGTCGTCGGTACCGCGGACGTGGGCGCTGGTG
GCGATTTCGCCGCCGTCTTCGACAAGCCGCTCCCGGCGGGCGACCACCAGCTGACGCTCAGAAGCGTCGGCTCGGCCGGT
CAGAGCAAGTCGTCGGAAGAGGTTGCCACCGTTTCAGTGCCGAAGGATGCGAGTGGCCAGTTGCTGGCGATGGTCTCGAG
GCAGGGCAAGGCGAGCCGGCTGATAACGACGCCGGACGCTGAGCCAAAGCCGGTGCAGGAGGCCGTCGCCACGGGTATGG
CGCCATCCGGTGAAACCGGTGGAGCTTCCGACACGTCCGCCGCTCCGGCCACCGTTCCCGGACTGCAGGTCACCGCGGTC
GAGATCGAAGGCAGCATGATGTATGTCGCAGGCAACGCCAAGCCCGGGGCGCTTGTCCGCATTTATGCGAACGACCAACT
GTTGGGTGAGGTGGAAGCCGACGACAAAGGGCATTTCGTCGTCGATGGCCCGATTGAACTCTCGATCGGCAGCCACATCA
TTCGTGCCGACATGATGAATGAAGACGCGAGCAAGGTGGCGATGCGTGCTTCCGTCCCCTTCGACAGGCCGGAAGGAGCC
CAGGTCGCCGCCATTGCCGGTACGACGCTCGGAGCGCCCACTGCGGGTCTCGACAGGCTGAAGGCGGAAGCGGGCAAGGC
GCTGACACTGCTGAAAGGGCTCTTCTCCGGCGGGAAGCAACCCTCCACGGAGCAACTTGCCGCAGCCCGCTCGGCAACCG
AATTCGCCCTTCAGTCGCTGGCCGAATTCAAGCCGGCCGACACCTCCGATCCCGCGCTGGCTGCGGCGGCCGCCGAGGCT
TCGGACGCGGCCTCGACGGCGCTGGCGGCGCTAAAGGCCTCGCCGCAGGACGCTGCAAGCGTTGCGGCGGCGGTGGAGAA
GGTGGATGGCGCTCTCGGGTCCGCATTGACGCGCCAGAATGTCAGCACGTCGGTGGCTTCCGCCGAGCCGCTGGCCATGC
CGACGAGCGAACTCTCCCGGACAGCCGCCCCTCCGGCAGCCGGTGATGCGGCCGCACCTGCGGCCGAGCCAGCAGCGGCG
ACCGGTTTGAATGCTGCAACGGAACAGCCCGAAACGATCGAGCAGGCGCCACTCAAGGAAAGCAAGACGTCGGTGATCAT
CCGCCGCGGCGACACGCTCTGGCAGATCTCGCGCCGTGTCTACGGTGCCGGTCTGCGCTACACCACGATCTATCTTGCAA
ACCGCGAGCAGATCGAAAACCCGGACCTGATCCGGCCCGGTCAGGTTTTTGGGGTTCCGGACGAGATGCTTACCGAGGAA
GAATCGCGGGAAATTCACCGCAAGCATATGCGGCACTAA

Upstream 100 bases:

>100_bases
CAGTGTGCTGCGGGTGCGCTATAATGCGCAGCTAGCGTCGTAGCGCCGGCCGATGGGGCATGCGGGGAGCATCAAGGCGC
TCCGCCCTGTGGAGAGTGGC

Downstream 100 bases:

>100_bases
GATTATCTTTTCCCGACAGTTCCATTGCGCCGATGGGAAGCTAAACCTACATGCAAAAAAAGAGGCGGTGTCATCCAAAA
AGGCGCCGCTTTTCCTTGAA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MIKNKASWVALGVLAIATALMVFVVQPNLRESDKEAVAQSGTGGQPARPAATDAGSSSAVPLGTAAKQAAAGSPNQVASS
ASDPATAWVVPGFDVLRVEPDGSTVVAGRAQPNTKLEILSGDAVVGTADVGAGGDFAAVFDKPLPAGDHQLTLRSVGSAG
QSKSSEEVATVSVPKDASGQLLAMVSRQGKASRLITTPDAEPKPVQEAVATGMAPSGETGGASDTSAAPATVPGLQVTAV
EIEGSMMYVAGNAKPGALVRIYANDQLLGEVEADDKGHFVVDGPIELSIGSHIIRADMMNEDASKVAMRASVPFDRPEGA
QVAAIAGTTLGAPTAGLDRLKAEAGKALTLLKGLFSGGKQPSTEQLAAARSATEFALQSLAEFKPADTSDPALAAAAAEA
SDAASTALAALKASPQDAASVAAAVEKVDGALGSALTRQNVSTSVASAEPLAMPTSELSRTAAPPAAGDAAAPAAEPAAA
TGLNAATEQPETIEQAPLKESKTSVIIRRGDTLWQISRRVYGAGLRYTTIYLANREQIENPDLIRPGQVFGVPDEMLTEE
ESREIHRKHMRH

Sequences:

>Translated_572_residues
MIKNKASWVALGVLAIATALMVFVVQPNLRESDKEAVAQSGTGGQPARPAATDAGSSSAVPLGTAAKQAAAGSPNQVASS
ASDPATAWVVPGFDVLRVEPDGSTVVAGRAQPNTKLEILSGDAVVGTADVGAGGDFAAVFDKPLPAGDHQLTLRSVGSAG
QSKSSEEVATVSVPKDASGQLLAMVSRQGKASRLITTPDAEPKPVQEAVATGMAPSGETGGASDTSAAPATVPGLQVTAV
EIEGSMMYVAGNAKPGALVRIYANDQLLGEVEADDKGHFVVDGPIELSIGSHIIRADMMNEDASKVAMRASVPFDRPEGA
QVAAIAGTTLGAPTAGLDRLKAEAGKALTLLKGLFSGGKQPSTEQLAAARSATEFALQSLAEFKPADTSDPALAAAAAEA
SDAASTALAALKASPQDAASVAAAVEKVDGALGSALTRQNVSTSVASAEPLAMPTSELSRTAAPPAAGDAAAPAAEPAAA
TGLNAATEQPETIEQAPLKESKTSVIIRRGDTLWQISRRVYGAGLRYTTIYLANREQIENPDLIRPGQVFGVPDEMLTEE
ESREIHRKHMRH
>Mature_572_residues
MIKNKASWVALGVLAIATALMVFVVQPNLRESDKEAVAQSGTGGQPARPAATDAGSSSAVPLGTAAKQAAAGSPNQVASS
ASDPATAWVVPGFDVLRVEPDGSTVVAGRAQPNTKLEILSGDAVVGTADVGAGGDFAAVFDKPLPAGDHQLTLRSVGSAG
QSKSSEEVATVSVPKDASGQLLAMVSRQGKASRLITTPDAEPKPVQEAVATGMAPSGETGGASDTSAAPATVPGLQVTAV
EIEGSMMYVAGNAKPGALVRIYANDQLLGEVEADDKGHFVVDGPIELSIGSHIIRADMMNEDASKVAMRASVPFDRPEGA
QVAAIAGTTLGAPTAGLDRLKAEAGKALTLLKGLFSGGKQPSTEQLAAARSATEFALQSLAEFKPADTSDPALAAAAAEA
SDAASTALAALKASPQDAASVAAAVEKVDGALGSALTRQNVSTSVASAEPLAMPTSELSRTAAPPAAGDAAAPAAEPAAA
TGLNAATEQPETIEQAPLKESKTSVIIRRGDTLWQISRRVYGAGLRYTTIYLANREQIENPDLIRPGQVFGVPDEMLTEE
ESREIHRKHMRH

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58106; Mature: 58106

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNKASWVALGVLAIATALMVFVVQPNLRESDKEAVAQSGTGGQPARPAATDAGSSSAV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PLGTAAKQAAAGSPNQVASSASDPATAWVVPGFDVLRVEPDGSTVVAGRAQPNTKLEILS
CCCHHHHHHCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEE
GDAVVGTADVGAGGDFAAVFDKPLPAGDHQLTLRSVGSAGQSKSSEEVATVSVPKDASGQ
CCEEEEECCCCCCCCCHHEECCCCCCCCCEEEHHHHCCCCCCCCCCCEEEEECCCCCCCC
LLAMVSRQGKASRLITTPDAEPKPVQEAVATGMAPSGETGGASDTSAAPATVPGLQVTAV
EEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
EIEGSMMYVAGNAKPGALVRIYANDQLLGEVEADDKGHFVVDGPIELSIGSHIIRADMMN
EECCEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCEEECCCEEECCCCEEEEHHHCC
EDASKVAMRASVPFDRPEGAQVAAIAGTTLGAPTAGLDRLKAEAGKALTLLKGLFSGGKQ
CCHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCC
PSTEQLAAARSATEFALQSLAEFKPADTSDPALAAAAAEASDAASTALAALKASPQDAAS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VAAAVEKVDGALGSALTRQNVSTSVASAEPLAMPTSELSRTAAPPAAGDAAAPAAEPAAA
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHH
TGLNAATEQPETIEQAPLKESKTSVIIRRGDTLWQISRRVYGAGLRYTTIYLANREQIEN
CCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECHHHCCC
PDLIRPGQVFGVPDEMLTEEESREIHRKHMRH
CCCCCCCCEECCCHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIKNKASWVALGVLAIATALMVFVVQPNLRESDKEAVAQSGTGGQPARPAATDAGSSSAV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PLGTAAKQAAAGSPNQVASSASDPATAWVVPGFDVLRVEPDGSTVVAGRAQPNTKLEILS
CCCHHHHHHCCCCCHHHHCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEE
GDAVVGTADVGAGGDFAAVFDKPLPAGDHQLTLRSVGSAGQSKSSEEVATVSVPKDASGQ
CCEEEEECCCCCCCCCHHEECCCCCCCCCEEEHHHHCCCCCCCCCCCEEEEECCCCCCCC
LLAMVSRQGKASRLITTPDAEPKPVQEAVATGMAPSGETGGASDTSAAPATVPGLQVTAV
EEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
EIEGSMMYVAGNAKPGALVRIYANDQLLGEVEADDKGHFVVDGPIELSIGSHIIRADMMN
EECCEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCEEECCCEEECCCCEEEEHHHCC
EDASKVAMRASVPFDRPEGAQVAAIAGTTLGAPTAGLDRLKAEAGKALTLLKGLFSGGKQ
CCHHHHEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCC
PSTEQLAAARSATEFALQSLAEFKPADTSDPALAAAAAEASDAASTALAALKASPQDAAS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VAAAVEKVDGALGSALTRQNVSTSVASAEPLAMPTSELSRTAAPPAAGDAAAPAAEPAAA
HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHH
TGLNAATEQPETIEQAPLKESKTSVIIRRGDTLWQISRRVYGAGLRYTTIYLANREQIEN
CCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECHHHCCC
PDLIRPGQVFGVPDEMLTEEESREIHRKHMRH
CCCCCCCCEECCCHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA