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The map label for this gene is rarD [H]

Identifier: 150395943

GI number: 150395943

Start: 771249

End: 772190

Strand: Direct

Name: rarD [H]

Synonym: Smed_0719

Alternate gene names: 150395943

Gene position: 771249-772190 (Clockwise)

Preceding gene: 150395942

Following gene: 150395945

Centisome position: 20.39

GC content: 59.87

Gene sequence:

>942_bases
ATGGCCGAGCCGAATGCGAAATTGAACGCAGAGAATACCGATTCCGCGAGAGGTTTCGCCTTCGCGCTCGCCGCATATCT
TCTATGGGGCTTCCTGCCTTTCTTCATGAAGGCGGTGGCGCATATTCCCGCGGCTGAAGTCGTTGCGCATCGTATCGTCT
GGTCGGTCCCGCTTGCCGGTCTCGTGCTGCTGTGGATCGGCCGGACGCAGGATGTTAAAGTTGCGCTGCGGTCTCCTCGC
GTGCTGATGATGGCTACGCTCACCGCAGGGCTCATCACCGTCAACTGGGGTATCTATGTCTGGGCGATCGGGGCGGGACG
GGCTATAGAGACGGCCCTGGGCTACTATATCAATCCTTTGTTCTCCATCTTTCTGGGCGCGCTGTTGCTCAAGGAGAGAC
CTAATCCGGCGCAGATGGTGGCAATCGGTCTCGCCGCGGTCGCCGTCGGTGTGCTTGCCTTCGACGCGGGTGGTCTCCCC
TGGGTCTCGCTCGGACTGTGTTTTTCCTGGGGCTTCTACGCGTTTTTCCGCAAAACGCTGCCTGTCGGTCCAAACCAGGG
CTTTTTCCTCGAAGTCTTGCTGCTCAGCATCCCCGCCGCCGGCTACATCATCTGGCTCGAGGCTGCCGGGCAGGGACACT
TCTTCGGTTACACCAGCATGACCGATGTTCTGCTGCTCCTCGCCTGCGGCGTCGTCACCGCCGTGCCTTTGATGATCTAT
GCCAATGGGGCAAAGCTGCTCCGGCTCTCGACGATCGGGATCATGCAATATATCGCTCCGACGATGATCTTCCTGATCGC
CGTCTTCGTCTTTCACGAACCTTTCGGAACGGCGAAGCTCGTTGCTTTCGCACTGATCTGGGCTGCGCTCTTCATCTATT
CGGGAGCGATGCTGCAGGAGAGCAGGGCACGGCGCGCGGCGCAACCGACACCGGCCGAATAG

Upstream 100 bases:

>100_bases
GCGCAGCAGTAAAGGCGGCAATGCGCCCGAGAGGTTTCGCCGTCGATTGAATCCGGAGCGGTTTCGCGCTTGGCTCCGGT
TTATTTTCAGGATCAGAATC

Downstream 100 bases:

>100_bases
AATCTTCAGCAAAAGCGCTGCGAGCGGGGGCTCAGAGTTTCGCGATGATACCGGCTTCGCCGTCGCGTCCGTTCGCGGAG
GTCGACGCAACTATTGCAGG

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAEPNAKLNAENTDSARGFAFALAAYLLWGFLPFFMKAVAHIPAAEVVAHRIVWSVPLAGLVLLWIGRTQDVKVALRSPR
VLMMATLTAGLITVNWGIYVWAIGAGRAIETALGYYINPLFSIFLGALLLKERPNPAQMVAIGLAAVAVGVLAFDAGGLP
WVSLGLCFSWGFYAFFRKTLPVGPNQGFFLEVLLLSIPAAGYIIWLEAAGQGHFFGYTSMTDVLLLLACGVVTAVPLMIY
ANGAKLLRLSTIGIMQYIAPTMIFLIAVFVFHEPFGTAKLVAFALIWAALFIYSGAMLQESRARRAAQPTPAE

Sequences:

>Translated_313_residues
MAEPNAKLNAENTDSARGFAFALAAYLLWGFLPFFMKAVAHIPAAEVVAHRIVWSVPLAGLVLLWIGRTQDVKVALRSPR
VLMMATLTAGLITVNWGIYVWAIGAGRAIETALGYYINPLFSIFLGALLLKERPNPAQMVAIGLAAVAVGVLAFDAGGLP
WVSLGLCFSWGFYAFFRKTLPVGPNQGFFLEVLLLSIPAAGYIIWLEAAGQGHFFGYTSMTDVLLLLACGVVTAVPLMIY
ANGAKLLRLSTIGIMQYIAPTMIFLIAVFVFHEPFGTAKLVAFALIWAALFIYSGAMLQESRARRAAQPTPAE
>Mature_312_residues
AEPNAKLNAENTDSARGFAFALAAYLLWGFLPFFMKAVAHIPAAEVVAHRIVWSVPLAGLVLLWIGRTQDVKVALRSPRV
LMMATLTAGLITVNWGIYVWAIGAGRAIETALGYYINPLFSIFLGALLLKERPNPAQMVAIGLAAVAVGVLAFDAGGLPW
VSLGLCFSWGFYAFFRKTLPVGPNQGFFLEVLLLSIPAAGYIIWLEAAGQGHFFGYTSMTDVLLLLACGVVTAVPLMIYA
NGAKLLRLSTIGIMQYIAPTMIFLIAVFVFHEPFGTAKLVAFALIWAALFIYSGAMLQESRARRAAQPTPAE

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=297, Percent_Identity=37.7104377104377, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33803; Mature: 33671

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPNAKLNAENTDSARGFAFALAAYLLWGFLPFFMKAVAHIPAAEVVAHRIVWSVPLAG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVLLWIGRTQDVKVALRSPRVLMMATLTAGLITVNWGIYVWAIGAGRAIETALGYYINPL
HHHHHCCCCCCHHEEECCCCEEEHHHHHHHHEEEECCEEEEEECCCHHHHHHHHHHHHHH
FSIFLGALLLKERPNPAQMVAIGLAAVAVGVLAFDAGGLPWVSLGLCFSWGFYAFFRKTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PVGPNQGFFLEVLLLSIPAAGYIIWLEAAGQGHFFGYTSMTDVLLLLACGVVTAVPLMIY
CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHE
ANGAKLLRLSTIGIMQYIAPTMIFLIAVFVFHEPFGTAKLVAFALIWAALFIYSGAMLQE
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
SRARRAAQPTPAE
HHHHHCCCCCCCC
>Mature Secondary Structure 
AEPNAKLNAENTDSARGFAFALAAYLLWGFLPFFMKAVAHIPAAEVVAHRIVWSVPLAG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVLLWIGRTQDVKVALRSPRVLMMATLTAGLITVNWGIYVWAIGAGRAIETALGYYINPL
HHHHHCCCCCCHHEEECCCCEEEHHHHHHHHEEEECCEEEEEECCCHHHHHHHHHHHHHH
FSIFLGALLLKERPNPAQMVAIGLAAVAVGVLAFDAGGLPWVSLGLCFSWGFYAFFRKTL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
PVGPNQGFFLEVLLLSIPAAGYIIWLEAAGQGHFFGYTSMTDVLLLLACGVVTAVPLMIY
CCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHE
ANGAKLLRLSTIGIMQYIAPTMIFLIAVFVFHEPFGTAKLVAFALIWAALFIYSGAMLQE
ECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
SRARRAAQPTPAE
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA