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The map label for this gene is yhjK [C]

Identifier: 150395791

GI number: 150395791

Start: 615148

End: 616947

Strand: Direct

Name: yhjK [C]

Synonym: Smed_0567

Alternate gene names: 150395791

Gene position: 615148-616947 (Clockwise)

Preceding gene: 150395790

Following gene: 150395792

Centisome position: 16.27

GC content: 60.0

Gene sequence:

>1800_bases
ATGTCGGCCGCCCCCGCAGAAGTCCTGTCGCTCCGCCGCTTCGGCGACGACCAAATCGTGACGCTTGCCAAACTCGTCAT
CGAAAATGCCCTGCAGCCGATCGTAGAAGCGACGACCGGGGCGGTGTTCGGCTATGAATCCCTGATGCGCGGCTTCGAAC
GGCTGGGGTTTGCCTCACCGGTCGAACTGCTCGACAGGGCGGAGAGCGCGGGGCAGTTGCTGGCGCTCGAGCACCTGATC
AACAGCCGCGCCGTCGCCGCCTTCGCGAACCTTCCCGATTTCTCGGCGCGTACGCTCTTCCTCAATTTCGATGCACGGCT
CGTCGGCGACGAGGGGGACATCGTCGATCGCCTCGTCAACCACTTGAAGCGTGCGAATATCCCGCCATCCTCCCTTTGCT
TCGAACTCTCGGAACGATTCGACAGCAGCAATATGCCGGACTTTTCGGTGCTCGTGCGGCAACTGCGGCTTGCCGGCTTC
AAGCTCGCGATCGACGACTTCGGCGCCGGGTTCAACGGCCTGAAGCTGCTCTGCGATCAGCCGGTAGATTATGTCAAGAT
CGACCGGCATTTCGTCTCTGGCATCGACAAGGACCCACGCAAACGTCACCTCGTTCGCCACACGGTCAACATGGCCCACG
TACTCGGGACCCGGGTGATCGCCGAGGGTGTGGAAACGGAGTCGGAGTTTCTCGTTTGCCGCGATTTGGGTTGCGATCTC
ATGCAGGGCTATTTCATCGCCCGGCCGACGACGCACCTCACGGAACTGCAGGCCGTCTATTCCCATCTCGAGCCGGTGGG
CAGCATCCGGCGGGCCTCTTCGACGCTCGACAGCATCCTGATCCGGAAGGAAATCGAGCAGCTTCCGGCGGCGAGGGAGA
GCGACGACCTCGATTCCGTGTTCGACCTTTTCCGGCTCAATCCGCGACAGGCTTTCTTTCCGGTGCTGAATGCCAATGGA
GAACCCCGCGGCATCCTGCACGAATACCACGTCAAGGAGATGATCTATCATCCCTTCGGTCGCGACCTCCTGAAAAACCG
CATCTATCAGCGCCGCATCTCGCATTTCGTAACGCCCGCGCCGATCGCCGACCTCGATACGCCCGCGGACGAAATGCTCA
AGATTTTCGCAGGCATGGATGGTAGCGATTGTGTCATCCTGACGGAGAACATGCGCTATGCCGGGATTCTCTCGGCTTCG
TCGCTCCTGAAGATCATCAACGAGAAGCAGCTGAAGATGGCACAGGAGCAGAATCCGTTGACTGGCCTTCCCGGCAATCG
GGCGATCCGCGATTACGTCCAGCATGCAGTCCTGGACGGCGACCGGGCCCGCTATTTCTGCTATTGCGATTTTGACGACT
TCAAGCCCTTCAACGACACCTACGGCTTTCAGAAGGGAGATCTCGCGATCACCCTCTTTGCGGCGCTTCTGCGGCGTCAT
TTCATCGGCGAGGAAAAGTTCCTGGGTCACGTTGGAGGCGACGATTTCTTCATCGGTATCGACGGTTGTACCGAGGAAGA
GATCCGGGCCGTCCTTAGACGTCTGATCGACGATTTCCGTTCGGACGTCCGCCAACTCTATTCGCCCGAGCATGTGTCGG
CGGGACGGATCAGCGGATATGGTCGCGATGGAGTGACAAAGGATTTTCCCCTGATGCGCTGTTCCATCGCCGTCCTCGTG
CTGCCGGAAGGCCTTGTGCTCTCGGATGGCCAGGCTGTCAGCAAGCGGATCGCGGAGATAAAGACGCGCGCCAAGGAAAG
CGACAATGGCGTCGTGCTGGAGCCGCTCGACCGTACCTGA

Upstream 100 bases:

>100_bases
CTTCCGAACCTTCATGAAACTTTCATCTTCGCGAAAGATTTCATTGACTATTGGCTCCGATGCTGGCGCGCGTTTGTGTG
TCCTTTCCCTGGAGCCCGGT

Downstream 100 bases:

>100_bases
GCGGATGGATGCGAGGCGATCTTTCCCGAACGGCGAGAGGGCTATAGGTATAGGCGGAACCGTTTTGCGAGGATGCCGTC
ATGACCCTTCCGACAGAAAT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 598

Protein sequence:

>599_residues
MSAAPAEVLSLRRFGDDQIVTLAKLVIENALQPIVEATTGAVFGYESLMRGFERLGFASPVELLDRAESAGQLLALEHLI
NSRAVAAFANLPDFSARTLFLNFDARLVGDEGDIVDRLVNHLKRANIPPSSLCFELSERFDSSNMPDFSVLVRQLRLAGF
KLAIDDFGAGFNGLKLLCDQPVDYVKIDRHFVSGIDKDPRKRHLVRHTVNMAHVLGTRVIAEGVETESEFLVCRDLGCDL
MQGYFIARPTTHLTELQAVYSHLEPVGSIRRASSTLDSILIRKEIEQLPAARESDDLDSVFDLFRLNPRQAFFPVLNANG
EPRGILHEYHVKEMIYHPFGRDLLKNRIYQRRISHFVTPAPIADLDTPADEMLKIFAGMDGSDCVILTENMRYAGILSAS
SLLKIINEKQLKMAQEQNPLTGLPGNRAIRDYVQHAVLDGDRARYFCYCDFDDFKPFNDTYGFQKGDLAITLFAALLRRH
FIGEEKFLGHVGGDDFFIGIDGCTEEEIRAVLRRLIDDFRSDVRQLYSPEHVSAGRISGYGRDGVTKDFPLMRCSIAVLV
LPEGLVLSDGQAVSKRIAEIKTRAKESDNGVVLEPLDRT

Sequences:

>Translated_599_residues
MSAAPAEVLSLRRFGDDQIVTLAKLVIENALQPIVEATTGAVFGYESLMRGFERLGFASPVELLDRAESAGQLLALEHLI
NSRAVAAFANLPDFSARTLFLNFDARLVGDEGDIVDRLVNHLKRANIPPSSLCFELSERFDSSNMPDFSVLVRQLRLAGF
KLAIDDFGAGFNGLKLLCDQPVDYVKIDRHFVSGIDKDPRKRHLVRHTVNMAHVLGTRVIAEGVETESEFLVCRDLGCDL
MQGYFIARPTTHLTELQAVYSHLEPVGSIRRASSTLDSILIRKEIEQLPAARESDDLDSVFDLFRLNPRQAFFPVLNANG
EPRGILHEYHVKEMIYHPFGRDLLKNRIYQRRISHFVTPAPIADLDTPADEMLKIFAGMDGSDCVILTENMRYAGILSAS
SLLKIINEKQLKMAQEQNPLTGLPGNRAIRDYVQHAVLDGDRARYFCYCDFDDFKPFNDTYGFQKGDLAITLFAALLRRH
FIGEEKFLGHVGGDDFFIGIDGCTEEEIRAVLRRLIDDFRSDVRQLYSPEHVSAGRISGYGRDGVTKDFPLMRCSIAVLV
LPEGLVLSDGQAVSKRIAEIKTRAKESDNGVVLEPLDRT
>Mature_598_residues
SAAPAEVLSLRRFGDDQIVTLAKLVIENALQPIVEATTGAVFGYESLMRGFERLGFASPVELLDRAESAGQLLALEHLIN
SRAVAAFANLPDFSARTLFLNFDARLVGDEGDIVDRLVNHLKRANIPPSSLCFELSERFDSSNMPDFSVLVRQLRLAGFK
LAIDDFGAGFNGLKLLCDQPVDYVKIDRHFVSGIDKDPRKRHLVRHTVNMAHVLGTRVIAEGVETESEFLVCRDLGCDLM
QGYFIARPTTHLTELQAVYSHLEPVGSIRRASSTLDSILIRKEIEQLPAARESDDLDSVFDLFRLNPRQAFFPVLNANGE
PRGILHEYHVKEMIYHPFGRDLLKNRIYQRRISHFVTPAPIADLDTPADEMLKIFAGMDGSDCVILTENMRYAGILSASS
LLKIINEKQLKMAQEQNPLTGLPGNRAIRDYVQHAVLDGDRARYFCYCDFDDFKPFNDTYGFQKGDLAITLFAALLRRHF
IGEEKFLGHVGGDDFFIGIDGCTEEEIRAVLRRLIDDFRSDVRQLYSPEHVSAGRISGYGRDGVTKDFPLMRCSIAVLVL
PEGLVLSDGQAVSKRIAEIKTRAKESDNGVVLEPLDRT

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=232, Percent_Identity=32.3275862068966, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081921, Length=226, Percent_Identity=28.3185840707965, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1790496, Length=224, Percent_Identity=30.3571428571429, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081845, Length=268, Percent_Identity=29.4776119402985, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=31.7180616740088, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081743, Length=224, Percent_Identity=27.2321428571429, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786507, Length=225, Percent_Identity=27.1111111111111, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=213, Percent_Identity=30.5164319248826, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87082096, Length=139, Percent_Identity=33.0935251798561, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=25, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788502, Length=231, Percent_Identity=28.1385281385281, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081980, Length=229, Percent_Identity=27.9475982532751, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788849, Length=145, Percent_Identity=29.6551724137931, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 67022; Mature: 66891

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAPAEVLSLRRFGDDQIVTLAKLVIENALQPIVEATTGAVFGYESLMRGFERLGFASP
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
VELLDRAESAGQLLALEHLINSRAVAAFANLPDFSARTLFLNFDARLVGDEGDIVDRLVN
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEECCEEECCCCHHHHHHHH
HLKRANIPPSSLCFELSERFDSSNMPDFSVLVRQLRLAGFKLAIDDFGAGFNGLKLLCDQ
HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCCHHHHHCC
PVDYVKIDRHFVSGIDKDPRKRHLVRHTVNMAHVLGTRVIAEGVETESEFLVCRDLGCDL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHH
MQGYFIARPTTHLTELQAVYSHLEPVGSIRRASSTLDSILIRKEIEQLPAARESDDLDSV
HCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
FDLFRLNPRQAFFPVLNANGEPRGILHEYHVKEMIYHPFGRDLLKNRIYQRRISHFVTPA
HHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
PIADLDTPADEMLKIFAGMDGSDCVILTENMRYAGILSASSLLKIINEKQLKMAQEQNPL
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGLPGNRAIRDYVQHAVLDGDRARYFCYCDFDDFKPFNDTYGFQKGDLAITLFAALLRRH
CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
FIGEEKFLGHVGGDDFFIGIDGCTEEEIRAVLRRLIDDFRSDVRQLYSPEHVSAGRISGY
HCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GRDGVTKDFPLMRCSIAVLVLPEGLVLSDGQAVSKRIAEIKTRAKESDNGVVLEPLDRT
CCCCCCCCCCHHHHEEEEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure 
SAAPAEVLSLRRFGDDQIVTLAKLVIENALQPIVEATTGAVFGYESLMRGFERLGFASP
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
VELLDRAESAGQLLALEHLINSRAVAAFANLPDFSARTLFLNFDARLVGDEGDIVDRLVN
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEECCEEECCCCHHHHHHHH
HLKRANIPPSSLCFELSERFDSSNMPDFSVLVRQLRLAGFKLAIDDFGAGFNGLKLLCDQ
HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCCHHHHHCC
PVDYVKIDRHFVSGIDKDPRKRHLVRHTVNMAHVLGTRVIAEGVETESEFLVCRDLGCDL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHH
MQGYFIARPTTHLTELQAVYSHLEPVGSIRRASSTLDSILIRKEIEQLPAARESDDLDSV
HCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
FDLFRLNPRQAFFPVLNANGEPRGILHEYHVKEMIYHPFGRDLLKNRIYQRRISHFVTPA
HHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
PIADLDTPADEMLKIFAGMDGSDCVILTENMRYAGILSASSLLKIINEKQLKMAQEQNPL
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGLPGNRAIRDYVQHAVLDGDRARYFCYCDFDDFKPFNDTYGFQKGDLAITLFAALLRRH
CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
FIGEEKFLGHVGGDDFFIGIDGCTEEEIRAVLRRLIDDFRSDVRQLYSPEHVSAGRISGY
HCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GRDGVTKDFPLMRCSIAVLVLPEGLVLSDGQAVSKRIAEIKTRAKESDNGVVLEPLDRT
CCCCCCCCCCHHHHEEEEEEECCCEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]