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The map label for this gene is ycjD [H]

Identifier: 150395770

GI number: 150395770

Start: 589212

End: 589583

Strand: Direct

Name: ycjD [H]

Synonym: Smed_0546

Alternate gene names: 150395770

Gene position: 589212-589583 (Clockwise)

Preceding gene: 150395769

Following gene: 150395771

Centisome position: 15.58

GC content: 61.29

Gene sequence:

>372_bases
ATGCCTCATGCTGACGTATCGCCGGAAGCTCGCGACAATGCGCGCCGCATGCGCAGTGCGATGACGGAGGCGGAGGTAAA
GCTCTGGAACGAACTGCGCGCGCATCGGCTGATGGGGCTTGATTTTCGCCGGCAAGTTCCGATCGCTGGTTACATAGTGG
ATTTCGCCTGCGCCGAGCATCGATTGATCGTCGGGATCGATGGGTCGCAGCATGCCGGAGCGGAGGAAGCCGATTGCGAT
CGGCGGCGTACGCAGCGTCTCGAAGCGCGGGGCTGGACGGTTCTGCGCTTTTGGAACGATGACGTGCTGCGAGATGTGAA
CGACGTGTGCGAGCATATTGTCCGTGTGATCGGGAAGGGGGCGACTGAGTGA

Upstream 100 bases:

>100_bases
CTCATCGACAGCAAGCTCTGATCCTTCGCTTTTTAATCCGACGGGCGACGGCGGTAGCCGTGCGCCCGTTTTTCGTATCG
CGCATTCGCGGGGCTTCGCC

Downstream 100 bases:

>100_bases
AGCGCTTGTGGCTCACCCCCCTCTGCCCTGCCGGGCATCTTCCCCTCAAGGGGGGAGGTCGGCCGGAAGCAAGGCTTCAC
ACAAAGTCAGCATCGAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MPHADVSPEARDNARRMRSAMTEAEVKLWNELRAHRLMGLDFRRQVPIAGYIVDFACAEHRLIVGIDGSQHAGAEEADCD
RRRTQRLEARGWTVLRFWNDDVLRDVNDVCEHIVRVIGKGATE

Sequences:

>Translated_123_residues
MPHADVSPEARDNARRMRSAMTEAEVKLWNELRAHRLMGLDFRRQVPIAGYIVDFACAEHRLIVGIDGSQHAGAEEADCD
RRRTQRLEARGWTVLRFWNDDVLRDVNDVCEHIVRVIGKGATE
>Mature_122_residues
PHADVSPEARDNARRMRSAMTEAEVKLWNELRAHRLMGLDFRRQVPIAGYIVDFACAEHRLIVGIDGSQHAGAEEADCDR
RRTQRLEARGWTVLRFWNDDVLRDVNDVCEHIVRVIGKGATE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=111, Percent_Identity=43.2432432432432, Blast_Score=96, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14094; Mature: 13963

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHADVSPEARDNARRMRSAMTEAEVKLWNELRAHRLMGLDFRRQVPIAGYIVDFACAEH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
RLIVGIDGSQHAGAEEADCDRRRTQRLEARGWTVLRFWNDDVLRDVNDVCEHIVRVIGKG
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
ATE
CCC
>Mature Secondary Structure 
PHADVSPEARDNARRMRSAMTEAEVKLWNELRAHRLMGLDFRRQVPIAGYIVDFACAEH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
RLIVGIDGSQHAGAEEADCDRRRTQRLEARGWTVLRFWNDDVLRDVNDVCEHIVRVIGKG
EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
ATE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]