| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150395769
Identifier: 150395769
GI number: 150395769
Start: 588323
End: 589132
Strand: Direct
Name: 150395769
Synonym: Smed_0545
Alternate gene names: NA
Gene position: 588323-589132 (Clockwise)
Preceding gene: 150395768
Following gene: 150395770
Centisome position: 15.56
GC content: 61.36
Gene sequence:
>810_bases ATGTCCGCTTCCCAAATAAGCCTTCCGAAACGCCTGCTGAGCGGCGTCGCCGTTGCAATGCTCGCTCTGGCGCTTGCGGC CTGCAGCGATGAAAAGCAGGAGGCTGCCTCGACGGCCCCCACGGAGACGACGGCTACCCCGGATACGACGACCACCGCCT CGACGGCTGCGAAACCAGCCGCCTTGAGCGAGGCGAAGCCAGCGGCGGAAGTGGCGCAGGCATCGACCCCTGCCGCAAAG GTGGAATTGCCGACGCCGGAGGGAACGGTCGACGCGGCGAAGCTTCTCGAGCCCGGCGCGCTGCCGGAGATGGCGTTGGG AGAGGCCAGCGCGCCGGTCACGATCGTCGAATATATGTCGATGACCTGCCCGCATTGCGCCAATTTCCACAACGACACCT TCGATGCGATCAAGACGAAATATGTCGACAGCGGCAAGGTGCGCTTCATCGTCCGCGAATTCCCGTTCGACCCGCGCGCC GCCGCCGCCTTCATGCTGGCCCGTTGCGCACCGGAAGGGCAATATTTCCCGATGATTTCCATGCTGTTCAAACAGCAGGA ACAGTGGGCGGCCGCGCAGAACGGCCGCGATGCACTGCTGCAATTGTCGAAACTTGCCGGTTTTACACAGGAGAGCTTCG AGGCCTGCTTGACGAACCAAAAACTTCTGGATGATGTGAATGCCGTGATGCAGAGGGGCGCCAAGGAATTCGGCGTCAAG TCGACACCGACCTTCTTCGTCAATGGTGAGCACTATTCGGGGGACATGTCGGTTGACGTTATGTCGGCCCTCATCGACAG CAAGCTCTGA
Upstream 100 bases:
>100_bases TGTTTGAACTCTGTTGAAACGCCCCCTCTTGTCGCCCTGCACGCGGCAAGTTATCGAAACCACGCTTTAATTTTCCTCGA GTAGAACACGGGTCCCCTCC
Downstream 100 bases:
>100_bases TCCTTCGCTTTTTAATCCGACGGGCGACGGCGGTAGCCGTGCGCCCGTTTTTCGTATCGCGCATTCGCGGGGCTTCGCCA TGCCTCATGCTGACGTATCG
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MSASQISLPKRLLSGVAVAMLALALAACSDEKQEAASTAPTETTATPDTTTTASTAAKPAALSEAKPAAEVAQASTPAAK VELPTPEGTVDAAKLLEPGALPEMALGEASAPVTIVEYMSMTCPHCANFHNDTFDAIKTKYVDSGKVRFIVREFPFDPRA AAAFMLARCAPEGQYFPMISMLFKQQEQWAAAQNGRDALLQLSKLAGFTQESFEACLTNQKLLDDVNAVMQRGAKEFGVK STPTFFVNGEHYSGDMSVDVMSALIDSKL
Sequences:
>Translated_269_residues MSASQISLPKRLLSGVAVAMLALALAACSDEKQEAASTAPTETTATPDTTTTASTAAKPAALSEAKPAAEVAQASTPAAK VELPTPEGTVDAAKLLEPGALPEMALGEASAPVTIVEYMSMTCPHCANFHNDTFDAIKTKYVDSGKVRFIVREFPFDPRA AAAFMLARCAPEGQYFPMISMLFKQQEQWAAAQNGRDALLQLSKLAGFTQESFEACLTNQKLLDDVNAVMQRGAKEFGVK STPTFFVNGEHYSGDMSVDVMSALIDSKL >Mature_268_residues SASQISLPKRLLSGVAVAMLALALAACSDEKQEAASTAPTETTATPDTTTTASTAAKPAALSEAKPAAEVAQASTPAAKV ELPTPEGTVDAAKLLEPGALPEMALGEASAPVTIVEYMSMTCPHCANFHNDTFDAIKTKYVDSGKVRFIVREFPFDPRAA AAFMLARCAPEGQYFPMISMLFKQQEQWAAAQNGRDALLQLSKLAGFTQESFEACLTNQKLLDDVNAVMQRGAKEFGVKS TPTFFVNGEHYSGDMSVDVMSALIDSKL
Specific function: May be required for disulfide bond formation in some proteins [H]
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR012335 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28537; Mature: 28405
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASQISLPKRLLSGVAVAMLALALAACSDEKQEAASTAPTETTATPDTTTTASTAAKPA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCH ALSEAKPAAEVAQASTPAAKVELPTPEGTVDAAKLLEPGALPEMALGEASAPVTIVEYMS HHHHCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHH MTCPHCANFHNDTFDAIKTKYVDSGKVRFIVREFPFDPRAAAAFMLARCAPEGQYFPMIS HCCCHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHH MLFKQQEQWAAAQNGRDALLQLSKLAGFTQESFEACLTNQKLLDDVNAVMQRGAKEFGVK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC STPTFFVNGEHYSGDMSVDVMSALIDSKL CCCEEEECCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SASQISLPKRLLSGVAVAMLALALAACSDEKQEAASTAPTETTATPDTTTTASTAAKPA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCH ALSEAKPAAEVAQASTPAAKVELPTPEGTVDAAKLLEPGALPEMALGEASAPVTIVEYMS HHHHCCHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHH MTCPHCANFHNDTFDAIKTKYVDSGKVRFIVREFPFDPRAAAAFMLARCAPEGQYFPMIS HCCCHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHH MLFKQQEQWAAAQNGRDALLQLSKLAGFTQESFEACLTNQKLLDDVNAVMQRGAKEFGVK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC STPTFFVNGEHYSGDMSVDVMSALIDSKL CCCEEEECCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA