Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 150008058

GI number: 150008058

Start: 1649514

End: 1650449

Strand: Reverse

Name: xerD [H]

Synonym: BDI_1421

Alternate gene names: 150008058

Gene position: 1650449-1649514 (Counterclockwise)

Preceding gene: 150008060

Following gene: 150008057

Centisome position: 34.3

GC content: 48.18

Gene sequence:

>936_bases
ATGAAAAAAGAAGAAGATTTTGTTATGGGCCTGTCCATCTACATGGCTTGTCTGCGTGAGAAAAAACGGTATTCCACGGC
GAAGAGTTATCAAGATGCCTTGAACTCGTTCAAGTGCTTTTGCGGTATGGAGGCGATTCCTTATGCCTATATTAATAGGA
ACAGGCTTTTGTGCTATCAGTCATGGTTGTTGGACAAGGGCCGTTCGTTGAATACGGTGTCTACCTATATGCGTCGGATT
CGTCACATTTATAACTTGGCCGTGGAGGCGAACGAGGCTCCCTTTGTACCCAACCTGTTCAAAGATGTCTTCACGGGCGT
TGAAAGCAAGCGGAAGAAGGCGTTGCCGCGAGAGATGCTGGAGCGTATGTTTAACGCCCCGTTGGGGGATCCGTCCTTGC
GGCGTGTACAGTTGACCGTTCGGTTGATGTTCGCGTTCAGCGGGATAGCGTTTGTGGATCTCACGCATTTGAAATGGGAG
AATATCCGGGATGGGATATTGCAGTATCACCGACAAAAGAGCGGGTCTCTCATACAGCTGGAGATTCCCTCCGGGGCGTT
GCGGCTGTTGGATGAGTTGTCCGCTTGTACGGCAAAGGAATCCTTTTATTTATTTCCTTTTTTGAGTGGAAGGAGAACCG
GTGAGGCGGCCTACAAAGAATATAACAGGACCTTGTCCCGCTTTAACCGTGACTTGAAGTTGTTGGCGAGATCGACAGGC
GTTACGCTTCCGGTCACCTCATATACGATCCGTCATTCATTCGCCTCGTTCTTGAAGGAACAAGATGTATCGATCGAGGT
TATCAGTGAGTTGTTGGGGCATAAGTCTATTAAGACAACACAGATCTATTTGAAGAGCTTCTCGTTGGAACGTTTGTCGA
CAGTGAACCGGAATTGTTTTGAGAGCGTGTGTAAACCGATACCCAAAGTGGGGTAA

Upstream 100 bases:

>100_bases
TCCAAAATCTCTTCATGGTAATGTTTTTACTCTAAATATGGTTTACTTAATTAATAGTGTACAAAGGTAGTATTTTTGGC
TTTTTTATTAAGGAGAAGAT

Downstream 100 bases:

>100_bases
GAGGCTTGCTACTTGGGAAGTAGCGTATTCTTTCACGGCGCAAAAGTAATAAAAAATAACAAATAACAAGCAATCATTAG
GCTTAGTTTGTTCATTAGTT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKKEEDFVMGLSIYMACLREKKRYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRI
RHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLGDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWE
NIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTG
VTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESVCKPIPKVG

Sequences:

>Translated_311_residues
MKKEEDFVMGLSIYMACLREKKRYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRI
RHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLGDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWE
NIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTG
VTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESVCKPIPKVG
>Mature_311_residues
MKKEEDFVMGLSIYMACLREKKRYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRI
RHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREMLERMFNAPLGDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWE
NIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTG
VTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESVCKPIPKVG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35874; Mature: 35874

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEEDFVMGLSIYMACLREKKRYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEHHH
SWLLDKGRSLNTVSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREML
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHCCHHHHH
ERMFNAPLGDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQL
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
EIPSGALRLLDELSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTG
ECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCF
CEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHH
ESVCKPIPKVG
HHHHHHCCCCC
>Mature Secondary Structure
MKKEEDFVMGLSIYMACLREKKRYSTAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEHHH
SWLLDKGRSLNTVSTYMRRIRHIYNLAVEANEAPFVPNLFKDVFTGVESKRKKALPREML
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHCCHHHHH
ERMFNAPLGDPSLRRVQLTVRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQL
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
EIPSGALRLLDELSACTAKESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTG
ECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCF
CEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHH
ESVCKPIPKVG
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]