Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 150006035

GI number: 150006035

Start: 4393878

End: 4394495

Strand: Direct

Name: sodB [H]

Synonym: BVU_3539

Alternate gene names: 150006035

Gene position: 4393878-4394495 (Clockwise)

Preceding gene: 150006032

Following gene: 150006036

Centisome position: 85.1

GC content: 43.2

Gene sequence:

>618_bases
ATGAATATATTATTAACCACTTTAATTTCATTAGTTATGACTTACGAAATGCCCAAACTCCCGTATGCAAACAACGGACT
CGAACCTGTAATCAGTCAGGCTACTATAGACTACCATTATGGCAAGCACTTACAAACATACGTAAACAATTTGAACTCTT
TGGTTCCGAGTACAGAATTTGAAGGAAAGACCGTAGAGGAAATTGTTGCATCAGCTCCCGACGGAGCGATATTCAATAAC
GCCGGACAAGTATTGAACCATACATTATATTTCCTTCAGTTCACCCCCAAACCCAACAAGCATGAACCGTCCGGCAAATT
GGCAGAAGCCATCAACCGGGACTTCGGAAGCTTTGAAAACTTCAAGAAAGAATTCAACGCCGCTTCCACAGGACTGTTTG
GTTCGGGCTGGGCTTGGCTTTCTATAGACAAGCAAGGAAAACTACATATCACCAAAGAGCCAAACGGAAGCAACCCGTGG
CGTGCAGGCCTGAAACCATTGCTGGGTTTCGATGTATGGGAACATGCTTACTATTTGGATTACCAGAACCGCCGTGCAGA
TCATGTGAACAAGTTATGGGAAATCATTGACTGGGATGTAGTAGAAAAACGTCTATAA

Upstream 100 bases:

>100_bases
CCTTTCGCCCGCAAAGATAGAGAAAGTTTGAGTTTATCAGAACAATTCTATGCTCAATAATGTTATTATGATAGAAGTTT
AATTAAAACCTCGACTAAAA

Downstream 100 bases:

>100_bases
AAGAACCCTTAACTATACATCATAATAAAGCTGCCTCGCACCCTATTCATTCAGGGAGCGGGGCAATCTGCTTTAAGATG
CAAAGATACAGCAGATATGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNILLTTLISLVMTYEMPKLPYANNGLEPVISQATIDYHYGKHLQTYVNNLNSLVPSTEFEGKTVEEIVASAPDGAIFNN
AGQVLNHTLYFLQFTPKPNKHEPSGKLAEAINRDFGSFENFKKEFNAASTGLFGSGWAWLSIDKQGKLHITKEPNGSNPW
RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDWDVVEKRL

Sequences:

>Translated_205_residues
MNILLTTLISLVMTYEMPKLPYANNGLEPVISQATIDYHYGKHLQTYVNNLNSLVPSTEFEGKTVEEIVASAPDGAIFNN
AGQVLNHTLYFLQFTPKPNKHEPSGKLAEAINRDFGSFENFKKEFNAASTGLFGSGWAWLSIDKQGKLHITKEPNGSNPW
RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDWDVVEKRL
>Mature_205_residues
MNILLTTLISLVMTYEMPKLPYANNGLEPVISQATIDYHYGKHLQTYVNNLNSLVPSTEFEGKTVEEIVASAPDGAIFNN
AGQVLNHTLYFLQFTPKPNKHEPSGKLAEAINRDFGSFENFKKEFNAASTGLFGSGWAWLSIDKQGKLHITKEPNGSNPW
RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDWDVVEKRL

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=42.0512820512821, Blast_Score=147, Evalue=7e-36,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=42.0512820512821, Blast_Score=147, Evalue=7e-36,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=38.860103626943, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=50.259067357513, Blast_Score=201, Evalue=3e-53,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=40.2912621359223, Blast_Score=149, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=38.0487804878049, Blast_Score=141, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=34.4827586206897, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=220, Percent_Identity=32.2727272727273, Blast_Score=111, Evalue=8e-26,
Organism=Drosophila melanogaster, GI17136812, Length=209, Percent_Identity=40.1913875598086, Blast_Score=146, Evalue=1e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23314; Mature: 23314

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLTTLISLVMTYEMPKLPYANNGLEPVISQATIDYHYGKHLQTYVNNLNSLVPSTEF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGKTVEEIVASAPDGAIFNNAGQVLNHTLYFLQFTPKPNKHEPSGKLAEAINRDFGSFEN
CCCHHHHHHHCCCCCCEECCHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHHH
FKKEFNAASTGLFGSGWAWLSIDKQGKLHITKEPNGSNPWRAGLKPLLGFDVWEHAYYLD
HHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEC
YQNRRADHVNKLWEIIDWDVVEKRL
CCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNILLTTLISLVMTYEMPKLPYANNGLEPVISQATIDYHYGKHLQTYVNNLNSLVPSTEF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGKTVEEIVASAPDGAIFNNAGQVLNHTLYFLQFTPKPNKHEPSGKLAEAINRDFGSFEN
CCCHHHHHHHCCCCCCEECCHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCHHHH
FKKEFNAASTGLFGSGWAWLSIDKQGKLHITKEPNGSNPWRAGLKPLLGFDVWEHAYYLD
HHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEC
YQNRRADHVNKLWEIIDWDVVEKRL
CCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA