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The map label for this gene is araC [C]

Identifier: 150005838

GI number: 150005838

Start: 4167971

End: 4168894

Strand: Direct

Name: araC [C]

Synonym: BVU_3334

Alternate gene names: 150005838

Gene position: 4167971-4168894 (Clockwise)

Preceding gene: 150005837

Following gene: 150005841

Centisome position: 80.72

GC content: 32.25

Gene sequence:

>924_bases
ATGATAAAAGGACATACCGACATAGACATCTGGAATACCGGCTTTTTCATTAACGCAGATTATTTTTCCGATGATTTCAT
TATTTATAATAATACGGGAAAAGATCTTACCCGCAAGACTCTTGCCCATCCTTTCTTTCACAACAATTCATATAAAACGA
CCTATACTTCATTTATACTGTGCCTTTCCGGAACTTCTGAAATAGAAATAGACTCCATCAACTATTCTACTAAAGAGAAT
ACATTACTAATGATGGTGCCTAATCAAATAATTAAATATAATAAAATAAGCGAGGATTACAAAGCACATCTCATCATGAT
ATCTAATAAATATTTTGATACCCGAGATAATTTTTATAAAATGATGTCTCTTTTAATTCCTCTAAAAAATCATCCATGTG
TCAATTTGAATATCGCGGAAACAGATTTATTGAAAACATATCATGTATTGCTTTACAAAAAAATCAGTGAAGAAAATAAT
CTGTTTCGTGATTTTACCATACAATATCTGATACAAGCTACTTTCTACGAAGTATGCCAGCTCCTACTAAAGCATCTGGA
AATAAAAAAGAAAAAACTGCCGCATAAAGAAGACATATTCAAACAGTTTTTAAAACTGGTAGAAACCCATCATTATAAAG
AAAGAGACATTTCTTTTTATGCTGAGAAACTTTGTCTAACCCCTAAGTATTTATCTTCCATAATCCGGGATGTTAGCGGA
GAACTGGCAGGAAACTGGATTGACAATTATGTAATTATTGAAGCAAAAGCCCTACTGATTTCTTCCAACCTTACCATTCA
GGAGATTTGCTATAAACTGAATTTTTCTACTCCGTCCTCATTCACCCGTTTCTTTAAACGAATAACCGGCATGTCACCAA
GAAAATTCAGAACACTAAAAGTTTTTCCCAACTTAATAGAATAA

Upstream 100 bases:

>100_bases
AACTAATAATTTTCTGAATGTCGCTTATTATTAGCAAATAGTCGAATGGTGTTGTTTCATTCCAATTAAATTTATTCTTT
TACTTTAAATAACATCAAGA

Downstream 100 bases:

>100_bases
AAACATATAATATCTTGCCACCTGCCCTTATCTTCATGAATGAAGACAAGTACTTTTCCCACCTCGCCCGGTCTCTATTT
GAACTTCAAATATCCTATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator; Phosphomethylpyrimidine Kinase; Regulator Of 4HPA-Hydroxylase Operon; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Transcriptional Regulator PobR; Transcriptional Regulator Arac Family; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; AraC-Family Transcriptional Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIKGHTDIDIWNTGFFINADYFSDDFIIYNNTGKDLTRKTLAHPFFHNNSYKTTYTSFILCLSGTSEIEIDSINYSTKEN
TLLMMVPNQIIKYNKISEDYKAHLIMISNKYFDTRDNFYKMMSLLIPLKNHPCVNLNIAETDLLKTYHVLLYKKISEENN
LFRDFTIQYLIQATFYEVCQLLLKHLEIKKKKLPHKEDIFKQFLKLVETHHYKERDISFYAEKLCLTPKYLSSIIRDVSG
ELAGNWIDNYVIIEAKALLISSNLTIQEICYKLNFSTPSSFTRFFKRITGMSPRKFRTLKVFPNLIE

Sequences:

>Translated_307_residues
MIKGHTDIDIWNTGFFINADYFSDDFIIYNNTGKDLTRKTLAHPFFHNNSYKTTYTSFILCLSGTSEIEIDSINYSTKEN
TLLMMVPNQIIKYNKISEDYKAHLIMISNKYFDTRDNFYKMMSLLIPLKNHPCVNLNIAETDLLKTYHVLLYKKISEENN
LFRDFTIQYLIQATFYEVCQLLLKHLEIKKKKLPHKEDIFKQFLKLVETHHYKERDISFYAEKLCLTPKYLSSIIRDVSG
ELAGNWIDNYVIIEAKALLISSNLTIQEICYKLNFSTPSSFTRFFKRITGMSPRKFRTLKVFPNLIE
>Mature_307_residues
MIKGHTDIDIWNTGFFINADYFSDDFIIYNNTGKDLTRKTLAHPFFHNNSYKTTYTSFILCLSGTSEIEIDSINYSTKEN
TLLMMVPNQIIKYNKISEDYKAHLIMISNKYFDTRDNFYKMMSLLIPLKNHPCVNLNIAETDLLKTYHVLLYKKISEENN
LFRDFTIQYLIQATFYEVCQLLLKHLEIKKKKLPHKEDIFKQFLKLVETHHYKERDISFYAEKLCLTPKYLSSIIRDVSG
ELAGNWIDNYVIIEAKALLISSNLTIQEICYKLNFSTPSSFTRFFKRITGMSPRKFRTLKVFPNLIE

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36232; Mature: 36232

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGHTDIDIWNTGFFINADYFSDDFIIYNNTGKDLTRKTLAHPFFHNNSYKTTYTSFIL
CCCCCCCEEEEECCEEEEECEECCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEHEEEEE
CLSGTSEIEIDSINYSTKENTLLMMVPNQIIKYNKISEDYKAHLIMISNKYFDTRDNFYK
EECCCCEEEEECCCCCCCCCEEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHH
MMSLLIPLKNHPCVNLNIAETDLLKTYHVLLYKKISEENNLFRDFTIQYLIQATFYEVCQ
HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LLLKHLEIKKKKLPHKEDIFKQFLKLVETHHYKERDISFYAEKLCLTPKYLSSIIRDVSG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
ELAGNWIDNYVIIEAKALLISSNLTIQEICYKLNFSTPSSFTRFFKRITGMSPRKFRTLK
HHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEE
VFPNLIE
ECCHHCC
>Mature Secondary Structure
MIKGHTDIDIWNTGFFINADYFSDDFIIYNNTGKDLTRKTLAHPFFHNNSYKTTYTSFIL
CCCCCCCEEEEECCEEEEECEECCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEHEEEEE
CLSGTSEIEIDSINYSTKENTLLMMVPNQIIKYNKISEDYKAHLIMISNKYFDTRDNFYK
EECCCCEEEEECCCCCCCCCEEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHH
MMSLLIPLKNHPCVNLNIAETDLLKTYHVLLYKKISEENNLFRDFTIQYLIQATFYEVCQ
HHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LLLKHLEIKKKKLPHKEDIFKQFLKLVETHHYKERDISFYAEKLCLTPKYLSSIIRDVSG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
ELAGNWIDNYVIIEAKALLISSNLTIQEICYKLNFSTPSSFTRFFKRITGMSPRKFRTLK
HHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEE
VFPNLIE
ECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA