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The map label for this gene is xerC [H]

Identifier: 150005688

GI number: 150005688

Start: 4005348

End: 4006562

Strand: Direct

Name: xerC [H]

Synonym: BVU_3179

Alternate gene names: 150005688

Gene position: 4005348-4006562 (Clockwise)

Preceding gene: 150005687

Following gene: 150005689

Centisome position: 77.58

GC content: 34.98

Gene sequence:

>1215_bases
ATGGATGCTACAATTTCAGTGGTTTGTTACAAATCCAAGACCCTATCTAATGGCGAACACCCTCTAATGCTTCGTATCAG
TAAAGACGGAAAGAAGAAATACCAAAGTTTGGGAATATCTGTAAATCCCAAGTTTTGGGACTTTCAGAAAAATAAGCCGA
AACCTAAATGTCCTAACTTGGAGTATCTTCAAAAGATTATTCTTGATAAGAAGCTGGAACTTCAAAAGAAAATGCTTGAA
ATAAAGTCCGACCAAAAAGAATACTCGGCTGCAACTCTGATTGAAGCAAATGAAAAGCTACAGGTTGCTAAAAACGTAGA
TTGCTTTTATAAAGAAATAATTGCTCAATGTGAGATTAACAACAAATGTGGCAATAGGCTGGTTTACCTTAATTCCTATA
ACTCTTTGAAAAGATTTACTAATGGAAAATTGGAAATCCCCTTTAACACCATAAATGTGGCATGGCTCGAAAAATATGAA
AAATGGCTTCGGAGTAATGGCAACAAAGAAACAACAATCAGTTTAATGTTCCGTACCTTACGAAGCACATATAATAAAGC
AATAAAAGAAAGATGTGCCCATTTGTCAGATTATCCTTTTCAAGAATATAAAATCAGTAAATTCGACACTTCTACTCAAA
AGAGAGCCATAGCTAAAACGGATATGTTGAAGTTTACAGAAACTTCCCAACCGATAGGACAGAAAAAATATGTGGAGTTA
AGTAAAGACATTTTTATATTCAGCTATCTGTGTGGCGGTATAAACTTTACTGATATAGCTAATTTAACACAAGAGAATAT
CGTTAATGGTAGGTTACACTATATCCGTCAGAAAACTGGTAAGCTAATCAAGATTGGAATACCCCAAGAAGCTATGCAAA
TTATTAAAAAATACACCGATGAGAGTAATGGTTATCTATTCCCGATATTGAACGTAAAAGTCCATAAAACAGCTTTGCAG
AAGCAGAATAGGATTCATAAAATACGTGGCAAGGTAAATGACATTCTAAAGACACTTGGTAAGCGATTGGGAATTGAAGC
TAATATAACAACCTATGTGGCTCGCCATTCATTCGCAAGTGTCCTTAAAAAATCGGGAGTAAATATTGCATTGATAAGTG
AAGCATTGGGACATTCAGACTTGGCGACTACTCAAATATACTTGGATAGCTTTGACAACGAGCAAGTAGATGAAGCAATG
AAGAATTTGCTGTAA

Upstream 100 bases:

>100_bases
TTACGGTAAAATGTAGCTCCTTTTTTTTATTCTCCGAATGGGGCGGTTTACTTTTGGTTTAACCAAGTGAGTTAAACCGA
GAGTTAAACCAAAAATGAAC

Downstream 100 bases:

>100_bases
CTTAAAAAGAGTTCTGCCCTATATATAATAAGGTGGAACTCTTTGTTTCCGTTAAAAGGTTATCAATGAATGTTATATGT
GCATATGTGGGACAAAAATG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MDATISVVCYKSKTLSNGEHPLMLRISKDGKKKYQSLGISVNPKFWDFQKNKPKPKCPNLEYLQKIILDKKLELQKKMLE
IKSDQKEYSAATLIEANEKLQVAKNVDCFYKEIIAQCEINNKCGNRLVYLNSYNSLKRFTNGKLEIPFNTINVAWLEKYE
KWLRSNGNKETTISLMFRTLRSTYNKAIKERCAHLSDYPFQEYKISKFDTSTQKRAIAKTDMLKFTETSQPIGQKKYVEL
SKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIPQEAMQIIKKYTDESNGYLFPILNVKVHKTALQ
KQNRIHKIRGKVNDILKTLGKRLGIEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
KNLL

Sequences:

>Translated_404_residues
MDATISVVCYKSKTLSNGEHPLMLRISKDGKKKYQSLGISVNPKFWDFQKNKPKPKCPNLEYLQKIILDKKLELQKKMLE
IKSDQKEYSAATLIEANEKLQVAKNVDCFYKEIIAQCEINNKCGNRLVYLNSYNSLKRFTNGKLEIPFNTINVAWLEKYE
KWLRSNGNKETTISLMFRTLRSTYNKAIKERCAHLSDYPFQEYKISKFDTSTQKRAIAKTDMLKFTETSQPIGQKKYVEL
SKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIPQEAMQIIKKYTDESNGYLFPILNVKVHKTALQ
KQNRIHKIRGKVNDILKTLGKRLGIEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
KNLL
>Mature_404_residues
MDATISVVCYKSKTLSNGEHPLMLRISKDGKKKYQSLGISVNPKFWDFQKNKPKPKCPNLEYLQKIILDKKLELQKKMLE
IKSDQKEYSAATLIEANEKLQVAKNVDCFYKEIIAQCEINNKCGNRLVYLNSYNSLKRFTNGKLEIPFNTINVAWLEKYE
KWLRSNGNKETTISLMFRTLRSTYNKAIKERCAHLSDYPFQEYKISKFDTSTQKRAIAKTDMLKFTETSQPIGQKKYVEL
SKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIPQEAMQIIKKYTDESNGYLFPILNVKVHKTALQ
KQNRIHKIRGKVNDILKTLGKRLGIEANITTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAM
KNLL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46453; Mature: 46453

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATISVVCYKSKTLSNGEHPLMLRISKDGKKKYQSLGISVNPKFWDFQKNKPKPKCPNL
CCCEEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCEECCCEECCCCCCCCCCCCCH
EYLQKIILDKKLELQKKMLEIKSDQKEYSAATLIEANEKLQVAKNVDCFYKEIIAQCEIN
HHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHEEECCCHHHHHHCHHHHHHHHHHHCCCC
NKCGNRLVYLNSYNSLKRFTNGKLEIPFNTINVAWLEKYEKWLRSNGNKETTISLMFRTL
CCCCCEEEEEECCHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSTYNKAIKERCAHLSDYPFQEYKISKFDTSTQKRAIAKTDMLKFTETSQPIGQKKYVEL
HHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIPQEAMQIIKKYTD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCC
ESNGYLFPILNVKVHKTALQKQNRIHKIRGKVNDILKTLGKRLGIEANITTYVARHSFAS
CCCCEEEEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKNLL
HHHHCCCCEEEEHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MDATISVVCYKSKTLSNGEHPLMLRISKDGKKKYQSLGISVNPKFWDFQKNKPKPKCPNL
CCCEEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCEECCCEECCCCCCCCCCCCCH
EYLQKIILDKKLELQKKMLEIKSDQKEYSAATLIEANEKLQVAKNVDCFYKEIIAQCEIN
HHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHEEECCCHHHHHHCHHHHHHHHHHHCCCC
NKCGNRLVYLNSYNSLKRFTNGKLEIPFNTINVAWLEKYEKWLRSNGNKETTISLMFRTL
CCCCCEEEEEECCHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RSTYNKAIKERCAHLSDYPFQEYKISKFDTSTQKRAIAKTDMLKFTETSQPIGQKKYVEL
HHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SKDIFIFSYLCGGINFTDIANLTQENIVNGRLHYIRQKTGKLIKIGIPQEAMQIIKKYTD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCC
ESNGYLFPILNVKVHKTALQKQNRIHKIRGKVNDILKTLGKRLGIEANITTYVARHSFAS
CCCCEEEEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VLKKSGVNIALISEALGHSDLATTQIYLDSFDNEQVDEAMKNLL
HHHHCCCCEEEEHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA