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The map label for this gene is yjfH [C]

Identifier: 150005407

GI number: 150005407

Start: 3655827

End: 3656594

Strand: Reverse

Name: yjfH [C]

Synonym: BVU_2890

Alternate gene names: 150005407

Gene position: 3656594-3655827 (Counterclockwise)

Preceding gene: 150005408

Following gene: 150005406

Centisome position: 70.82

GC content: 44.01

Gene sequence:

>768_bases
ATGTTAGAAAAGAATGAAATGATTTTCGGTGTACGCGCTGTTATTGAAGCCATACAAGCCGGAAGAGAGATAGATAAAGT
ATTGGTGAAGAAAGATATACAGAGCGAACTGTCCAAAGAACTGTTTGCCTGCTTGAAAAATACCCTCATCCCTGTTCAGC
GTGTACCCGTGGAGCGTATTAACCGTATTACCCGGAAAAACCATCAGGGAGTTGTAGCATTCATCTCCTCTGTCACCTAC
CAGAAAACAGAAGATCTGGTACCTTTCCTGTTTGAAGAAGGAAAAACACCCCTATTCGTCATGCTGGATGGAATTACCGA
TGTACGTAACTTCGGAGCCATTGCCCGTACCTGCGAATGTGCCGGTGCAGATGCCATTATTATTCCCTCGAAAAACAGTG
TCAGTGTCAATGCCGACGCAATGAAAACATCAGCAGGAGCTCTGCACACTCTTCCCGTATGCCGCGAACAAAATCTGACT
AATACCATCAAGTATCTGAAAGACTGCGGATTCAAGATTGTAGCAGCCACGGAAAAAGGTGATTATGATTACACCAAAGC
AAACTATAAAGACCCTGTATGTATCATTATGGGAGCCGAGGACACAGGTGTTCCCTACGAACACCTTTCCCTGTGCGATG
AATGGATCAAAATACCGTTAATGGGTAAAATAGAATCATTGAACGTATCGGTTGCCGCAGGTATTCTGATTTATGAAGCT
GTAAAGCAACGCGGCTTCACAGAAGACAAAACGGCATCCGCTTTATAA

Upstream 100 bases:

>100_bases
CCTTGACAGAGGCAGCCCTGAACAATGCAAAGGCGCTGATAAGTGGCTAGTGCCAATTACCACTAACCACCTGTCACTAA
CCATTAACCACTTATTAAAT

Downstream 100 bases:

>100_bases
ATACCGTATCATCGTTAACAAACAACTAACTATATCATGAAGAAAGTACTTTTGATACTGGCATGCGGCATAGCCGCCCA
GCTAAGCTATGCACAAGCAA

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLEKNEMIFGVRAVIEAIQAGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITRKNHQGVVAFISSVTY
QKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLT
NTIKYLKDCGFKIVAATEKGDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA
VKQRGFTEDKTASAL

Sequences:

>Translated_255_residues
MLEKNEMIFGVRAVIEAIQAGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITRKNHQGVVAFISSVTY
QKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLT
NTIKYLKDCGFKIVAATEKGDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA
VKQRGFTEDKTASAL
>Mature_255_residues
MLEKNEMIFGVRAVIEAIQAGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITRKNHQGVVAFISSVTY
QKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLT
NTIKYLKDCGFKIVAATEKGDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA
VKQRGFTEDKTASAL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=267, Percent_Identity=28.0898876404494, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1790623, Length=242, Percent_Identity=31.8181818181818, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1790083, Length=151, Percent_Identity=33.112582781457, Blast_Score=82, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17555908, Length=256, Percent_Identity=28.515625, Blast_Score=88, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28136; Mature: 28136

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKNEMIFGVRAVIEAIQAGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERI
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH
NRITRKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG
CCCCEEEEECCCCEEECHHHHHCCCCCHHHCCCHHCCCHHHHHHHHHHCCCEEEEEECCC
DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHH
VKQRGFTEDKTASAL
HHHCCCCCCHHCCCC
>Mature Secondary Structure
MLEKNEMIFGVRAVIEAIQAGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERI
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH
NRITRKNHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG
CCCCEEEEECCCCEEECHHHHHCCCCCHHHCCCHHCCCHHHHHHHHHHCCCEEEEEECCC
DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHH
VKQRGFTEDKTASAL
HHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA