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The map label for this gene is csrA

Identifier: 148828001

GI number: 148828001

Start: 1393294

End: 1393485

Strand: Reverse

Name: csrA

Synonym: CGSHiGG_07560

Alternate gene names: 148828001

Gene position: 1393485-1393294 (Counterclockwise)

Preceding gene: 148828002

Following gene: 148828000

Centisome position: 73.84

GC content: 36.98

Gene sequence:

>192_bases
ATGTTAATCTTAACTCGTAAAGTTGGCGAAAGTGTACTTATTGGAGATGATATTTCTATCACGGTTTTGAGTGTACGTGG
AAACCAAGTTAAACTCGGTGTTGAAGCACCTAAAGAAGTATCCGTTCACCGAGAAGAAATTTACCAACGAATTAAACAAA
CGAAAGATGAACCCTATTTAGGTTCCTCTTAG

Upstream 100 bases:

>100_bases
ACTGGTTAAACAAAAATCTGTAGTACAAGCTGGTTGGTGGAATGCCAACCGTTCCTTGATTGATAGGATATCTAATAAAT
GCAAACTAAGGAGATAAAAG

Downstream 100 bases:

>100_bases
TTAAACAATGGATATGATAATATGAAAGCAATTATTCCTGTCGCCGGTCTTGGCACACGTATGTTGCCCGCCACGAAGGC
GATTCCGAAGGAAATGCTCA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 63

Protein sequence:

>63_residues
MLILTRKVGESVLIGDDISITVLSVRGNQVKLGVEAPKEVSVHREEIYQRIKQTKDEPYLGSS

Sequences:

>Translated_63_residues
MLILTRKVGESVLIGDDISITVLSVRGNQVKLGVEAPKEVSVHREEIYQRIKQTKDEPYLGSS
>Mature_63_residues
MLILTRKVGESVLIGDDISITVLSVRGNQVKLGVEAPKEVSVHREEIYQRIKQTKDEPYLGSS

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=57, Percent_Identity=68.4210526315789, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_HAEI8 (Q4QM87)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_248520.1
- HSSP:   P33911
- ProteinModelPortal:   Q4QM87
- SMR:   Q4QM87
- STRING:   Q4QM87
- GeneID:   3430283
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI0977
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   DIKVTIL
- PhylomeDB:   Q4QM87
- ProtClustDB:   PRK01712
- BioCyc:   HINF281310:NTHI0977-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7024; Mature: 7024

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRKVGESVLIGDDISITVLSVRGNQVKLGVEAPKEVSVHREEIYQRIKQTKDEPYL
CEEEECCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
GSS
CCC
>Mature Secondary Structure
MLILTRKVGESVLIGDDISITVLSVRGNQVKLGVEAPKEVSVHREEIYQRIKQTKDEPYL
CEEEECCCCCEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
GSS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA