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The map label for this gene is ydcM [C]

Identifier: 148823979

GI number: 148823979

Start: 3112157

End: 3113536

Strand: Reverse

Name: ydcM [C]

Synonym: TBFG_12804

Alternate gene names: 148823979

Gene position: 3113536-3112157 (Counterclockwise)

Preceding gene: 148823980

Following gene: 148823978

Centisome position: 70.37

GC content: 66.45

Gene sequence:

>1380_bases
ATGGCGAAATTCGAGATTCCTGAGGGCTGGATGGTTCAGGCTTTCCGGTTCACGCTCGATCCGACCGCCGAGCAGGCCCG
CGCGTTGGCACGGCATTTCGGTGCCCGCCGCAAGGCCTACAACTGGACCGTCGCCACCCTGAAAGCCGATATCGACGCCT
GGCAGGCGACCGGGATCCAGACGGCAAAGCCGTCGCTGCGGGTGTTGCGGAAGCGCTGGAACACCGTCAAGAACGACGTG
TGCGTCAACATCGAGACCGGTGTTGTGTGGTGGCCGGAGTGCTCGAAGGAGGCCTACGCCGACGGTATTGACGGCGCGGT
CGACGCGTACTGGAACTGGCAGAACTCGCGATCAGGCAAACGTGATGGCAAAAGGATGGGCTTTCCCCGGTTTAAGAAGA
AGGGACGCGACCCAGACCGGGTGACGTTCACGACCGGAGCGATGCGCGTCGAGCCCGACCGGAGCCACCTCACGCTGCCG
GTCATCGGGACCGTCCGCACCCACGAGAACACGCGCCGGGTTGAGCGGCTCATCGCCAAAGGCCGGTCGCGGGTGCTCGC
GATCACGGTGCGCCGTAACGGGACCCGGATCGATGCGAGTGTGCGGGTCCTCGTGCAGCGCCCGCAGCAACCGAAGGTGA
CCGACCCCGGTTCACGGGTCGGCGTTGATGTCGGGGTGCGCCGCCTGGCCACGGTCGCCACCGCCGACGGCGCGGTGCTC
GAACGAGTGCCGAATCCACGGCCACTCGACGCGGCACTCAACGAGCTACGGCATGTCTGCCGGGCACGGTCGCGCTGCAC
GAAAGGCTCACGTCGCTACCGTGAGCGCACCACCGAAATATCCCGGCTGCACCGCCGGGTCAACGATGTTCGCACCCACC
ACCTGCACTGTCTGACAACGCATTTGGCTAAGACCCACGGCCGCATCGTTGTCGAAGGCCTGGACGCGGCAGGGATGCTG
CGGCAACAGGGCCTCTCGGGTGCCCGCGCTCGCCGGCGCGGACTCTCCGACGCGGCCCTGGGCACCCCGCGCCGCCACCT
GTCCTACAAGACAGGCTGGTACGGGTCACAACTAGTGGTCGCTGACCGCTGGTTCCCATCGTCGAAAACCTGCCACGTCT
GCGGGCATGTCCAAGAGATCGGATGGGCCGAGCACTGGCAATGCGATTCGTGCTCGGCATCGCATCAGCGTGATGACTGC
GCAGCGATCAACCTCGCACGCTACGAGGACACCAGTAGCGTCGTCGGCCCAGTTGGGGCCGCCGTCAAGCGTGGAGCCGA
CCGTAAGACCCGGCCTGGCCGGGCTGGTGGCCGTGAAGCGCGGAAGGGAAGCAGCCGCAAGGCTGCCGAACAACCCCGAG
ACGGGGTGCAAGTCGCGTGA

Upstream 100 bases:

>100_bases
TCTTGACCTCGATGTGCGCCCGGCTGTACGGCAAGCGCGCTGCGCAGAACCGGGCCAAGCGCGCATTGGCGGCCGCCGCC
GAAGAGTCGGAGGCTGCCTG

Downstream 100 bases:

>100_bases
CCACTAAAGATCACTCACTTGCAACGGCAACGATGCCTAACCAAGGGTCGTCGAACAAGGTTTACGTCATTGGCGTGGGC
ATGACGAAGTTCGAAAAGCC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MAKFEIPEGWMVQAFRFTLDPTAEQARALARHFGARRKAYNWTVATLKADIDAWQATGIQTAKPSLRVLRKRWNTVKNDV
CVNIETGVVWWPECSKEAYADGIDGAVDAYWNWQNSRSGKRDGKRMGFPRFKKKGRDPDRVTFTTGAMRVEPDRSHLTLP
VIGTVRTHENTRRVERLIAKGRSRVLAITVRRNGTRIDASVRVLVQRPQQPKVTDPGSRVGVDVGVRRLATVATADGAVL
ERVPNPRPLDAALNELRHVCRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHCLTTHLAKTHGRIVVEGLDAAGML
RQQGLSGARARRRGLSDAALGTPRRHLSYKTGWYGSQLVVADRWFPSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDC
AAINLARYEDTSSVVGPVGAAVKRGADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA

Sequences:

>Translated_459_residues
MAKFEIPEGWMVQAFRFTLDPTAEQARALARHFGARRKAYNWTVATLKADIDAWQATGIQTAKPSLRVLRKRWNTVKNDV
CVNIETGVVWWPECSKEAYADGIDGAVDAYWNWQNSRSGKRDGKRMGFPRFKKKGRDPDRVTFTTGAMRVEPDRSHLTLP
VIGTVRTHENTRRVERLIAKGRSRVLAITVRRNGTRIDASVRVLVQRPQQPKVTDPGSRVGVDVGVRRLATVATADGAVL
ERVPNPRPLDAALNELRHVCRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHCLTTHLAKTHGRIVVEGLDAAGML
RQQGLSGARARRRGLSDAALGTPRRHLSYKTGWYGSQLVVADRWFPSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDC
AAINLARYEDTSSVVGPVGAAVKRGADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA
>Mature_458_residues
AKFEIPEGWMVQAFRFTLDPTAEQARALARHFGARRKAYNWTVATLKADIDAWQATGIQTAKPSLRVLRKRWNTVKNDVC
VNIETGVVWWPECSKEAYADGIDGAVDAYWNWQNSRSGKRDGKRMGFPRFKKKGRDPDRVTFTTGAMRVEPDRSHLTLPV
IGTVRTHENTRRVERLIAKGRSRVLAITVRRNGTRIDASVRVLVQRPQQPKVTDPGSRVGVDVGVRRLATVATADGAVLE
RVPNPRPLDAALNELRHVCRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHCLTTHLAKTHGRIVVEGLDAAGMLR
QQGLSGARARRRGLSDAALGTPRRHLSYKTGWYGSQLVVADRWFPSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCA
AINLARYEDTSSVVGPVGAAVKRGADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=296, Percent_Identity=29.7297297297297, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 51353; Mature: 51222

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFEIPEGWMVQAFRFTLDPTAEQARALARHFGARRKAYNWTVATLKADIDAWQATGIQ
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHCCCC
TAKPSLRVLRKRWNTVKNDVCVNIETGVVWWPECSKEAYADGIDGAVDAYWNWQNSRSGK
CCCHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHCCCCCCHHHEECCCCCCCCC
RDGKRMGFPRFKKKGRDPDRVTFTTGAMRVEPDRSHLTLPVIGTVRTHENTRRVERLIAK
CCCCCCCCHHHHHCCCCCCEEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRSRVLAITVRRNGTRIDASVRVLVQRPQQPKVTDPGSRVGVDVGVRRLATVATADGAVL
CCCEEEEEEEECCCCEECHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
ERVPNPRPLDAALNELRHVCRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHCLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLAKTHGRIVVEGLDAAGMLRQQGLSGARARRRGLSDAALGTPRRHLSYKTGWYGSQLVV
HHHHHCCEEEEECCCHHHHHHHHCCCHHHHHHCCCCHHHCCCCHHHCCEECCCCCCEEEE
ADRWFPSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGA
EECCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCHHHHHHHH
AVKRGADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA
HHHCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
AKFEIPEGWMVQAFRFTLDPTAEQARALARHFGARRKAYNWTVATLKADIDAWQATGIQ
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHCCCC
TAKPSLRVLRKRWNTVKNDVCVNIETGVVWWPECSKEAYADGIDGAVDAYWNWQNSRSGK
CCCHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCHHHHCCCCCCHHHEECCCCCCCCC
RDGKRMGFPRFKKKGRDPDRVTFTTGAMRVEPDRSHLTLPVIGTVRTHENTRRVERLIAK
CCCCCCCCHHHHHCCCCCCEEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRSRVLAITVRRNGTRIDASVRVLVQRPQQPKVTDPGSRVGVDVGVRRLATVATADGAVL
CCCEEEEEEEECCCCEECHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
ERVPNPRPLDAALNELRHVCRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHCLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLAKTHGRIVVEGLDAAGMLRQQGLSGARARRRGLSDAALGTPRRHLSYKTGWYGSQLVV
HHHHHCCEEEEECCCHHHHHHHHCCCHHHHHHCCCCHHHCCCCHHHCCEECCCCCCEEEE
ADRWFPSSKTCHVCGHVQEIGWAEHWQCDSCSASHQRDDCAAINLARYEDTSSVVGPVGA
EECCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCHHHHHHHH
AVKRGADRKTRPGRAGGREARKGSSRKAAEQPRDGVQVA
HHHCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]