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The map label for this gene is ygaV [C]

Identifier: 148659843

GI number: 148659843

Start: 90933

End: 91277

Strand: Direct

Name: ygaV [C]

Synonym: MRA_0085

Alternate gene names: 148659843

Gene position: 90933-91277 (Clockwise)

Preceding gene: 148659842

Following gene: 148659844

Centisome position: 2.06

GC content: 65.51

Gene sequence:

>345_bases
GTGGAGTCCGAACCGCTGTACAAGCTCAAGGCGGAGTTCTTCAAAACCCTTGCGCATCCGGCGCGGATCAGGATTTTGGA
GCTGCTGGTCGAGCGGGACCGTTCGGTCGGTGAGTTGCTGTCCTCGGACGTCGGCCTGGAGTCGTCGAACCTGTCCCAGC
AGCTGGGTGTGCTACGCCGGGCGGGTGTTGTCGCGGCACGTCGTGACGGCAACGCGATGATCTATTCGATTGCCGCACCC
GATATCGCCGAGCTGCTGGCGGTGGCACGCAAGGTGCTGGCCAGGGTGCTCAGCGACCGGGTGGCGGTGCTAGAGGACCT
CCGCGCCGGCGGCTCGGCCACGTAA

Upstream 100 bases:

>100_bases
CCGTAGCCGATTGGCCGCGGGCGGCCCGCACGCATCCGCACTATCTGATAAATTCTTCAACTCGTCAACCGATGTAACGC
TGAAGCTCTCAGGAGACGCG

Downstream 100 bases:

>100_bases
CGCCATGGGTTGGGTTGCCAAGATTTTCCGTGTTGGCCGGGTGGTCGAGCCCGCGGCCCCCTTACCGGCGGCGATAGCCG
AACCACCCGCCGGGGTACGG

Product: putative transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAP
DIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT

Sequences:

>Translated_114_residues
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAP
DIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT
>Mature_114_residues
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAP
DIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): Y0081_MYCTU (O53626)

Other databases:

- EMBL:   AE000516
- EMBL:   BX842572
- PIR:   B70850
- RefSeq:   NP_214595.1
- RefSeq:   NP_334499.1
- ProteinModelPortal:   O53626
- SMR:   O53626
- EnsemblBacteria:   EBMYCT00000002383
- EnsemblBacteria:   EBMYCT00000072071
- GeneID:   887012
- GeneID:   922866
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT0088
- KEGG:   mtu:Rv0081
- TIGR:   MT0088
- TubercuList:   Rv0081
- GeneTree:   EBGT00050000015472
- HOGENOM:   HBG742701
- OMA:   FFKTLGH
- ProtClustDB:   CLSK790246
- GO:   GO:0005622
- InterPro:   IPR001845
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00778
- SMART:   SM00418

Pfam domain/function: PF01022 HTH_5

EC number: NA

Molecular weight: Translated: 12357; Mature: 12357

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00846 HTH_ARSR_1; PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRR
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
AGVVAARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT
HHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MESEPLYKLKAEFFKTLAHPARIRILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRR
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
AGVVAARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT
HHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036