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The map label for this gene is radA [H]

Identifier: 148652636

GI number: 148652636

Start: 981017

End: 982465

Strand: Direct

Name: radA [H]

Synonym: PsycPRwf_0827

Alternate gene names: 148652636

Gene position: 981017-982465 (Clockwise)

Preceding gene: 148652635

Following gene: 148652645

Centisome position: 32.93

GC content: 51.76

Gene sequence:

>1449_bases
ATGGCCAAATCAAAATCAAGTTATGTCTGCCAAAATTGCGGCGCCTATTTTGGTAAATGGGCCGGACAATGCTCTGACTG
CGGGGAGTGGAATACTCTTGTTGAGGCGCCCAATGTCAGCCTACCGCATCACAATAAGTCGGCGGCTAAAGGCGCTATGG
CAGCACATACAGGCCCTAAGATGTTGGCTGGTGCAAAGTCTGATCGTATGAATTATTCAGGCTCACAAAGCGGCGTTGTC
ACGTTAGGCTCAGTCAATGTCACCTTCGATACCCGTCTGCCTACTGGGATTAGTGAATTTGACCGCGTCCTTGGTGGCGG
CTTAGTGGCCGGCTCAGTGGTACTTATTGGTGGTGACCCTGGTATTGGTAAATCGACCATTTTATTGCAGACAGCGGCCA
ATATGGCAGACCCTGAGTCTTTGTCCGGCAGTGCATTGTATGTGACCGGAGAGGAGTCGTTATCGCAAGTGGCCATGCGG
GCACAGCGCTTAGGGTTATCCAGCGATCACTTAAAGGTCATGACAGAGACCAATGTGGAGACCATCTGCGCAGCACTGAC
CCAAGAGCAGCCTGCGGTGGCTATTATTGACTCTATTCAGACTATTTATACCGATGCCATAAACTCGGCACCCGGGGGCG
TCAGTCAAATTCGAGAGTCAGCAGCAATGCTCACCCGCTATGCCAAGCAAACCGGTACGGCCTTATTCTTGGTAGGTCAT
GTGACCAAAGAGGGTACGTTGGCTGGGCCACGCGTGCTTGAGCACATGGTGGATACGGTGTTGTATTTCGAGGGTCAGTC
TGATTCTCGCTTTCGTATGATACGTGCGGTAAAAAACCGCTTTGGCGCGGTCAATGAGCTGGGTATTTTTGGAATGACAG
ATACCGGTCTAAAAGAAGTGGCCAATCCTTCAGCCATATTCTTAAGTCGTTATGATAAGCCGATATCTGGATCCATTGTC
ATGGTTAGCCGTGAAGGCACTCGGCCGCTATTGGTAGAGGTGCAAGCGTTGGTCGATGATTCTGCGGGTCAGCCCAGACG
TATGGCATTAGGCCTAGATCCTCAGCGCTTGGCGATGCTGCTGGCAGTCATGCACCGTCATGGCGGTATACATACTAGCG
GACAGGATGTGTATGTCAACGTGGTGGGCGGGGTAAAAGTGATGGAGACCGGCTCAGACTTGGCGGTACTGTTAGCTTGT
GCCTCAAGTATTAAGGAGCGGCCGTTGCCCTCATCTTTGGCGGTATTTGGTGAGGTGGGGCTATCGGGCGAGATACGCCC
GGTTCCCAACGGTCAAGAGCGCCTAAAAGAGGCAATGAAACACGGCTTCACCCACGCCATCGTACCCAAAGCCAATGCCC
CAAAAAACCTTATGGGGCAGTTTAAGGGTATCACAGTGATAACGGCTGATCGCTTGGATGATGCCATTGACCGAGCGTTT
GAAATTTAA

Upstream 100 bases:

>100_bases
TTTAACGCCAAAGTTTGTCGCAATCGGCGCATCTTTATTAATCAACCATTTTGCATATGAGACGCCTCATATGTAGCATC
ACGAACTAAGGGTAGCGGTT

Downstream 100 bases:

>100_bases
GGCGCTGAGTGTTTTAAATTAGCGCTCATAATACGCGTAAAAATGATGCACCGGACCATGGCCATGACCGACATTAAGCT
CATCTGCATGCGCTAGAGCA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MAKSKSSYVCQNCGAYFGKWAGQCSDCGEWNTLVEAPNVSLPHHNKSAAKGAMAAHTGPKMLAGAKSDRMNYSGSQSGVV
TLGSVNVTFDTRLPTGISEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAANMADPESLSGSALYVTGEESLSQVAMR
AQRLGLSSDHLKVMTETNVETICAALTQEQPAVAIIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQTGTALFLVGH
VTKEGTLAGPRVLEHMVDTVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPISGSIV
MVSREGTRPLLVEVQALVDDSAGQPRRMALGLDPQRLAMLLAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLAC
ASSIKERPLPSSLAVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPKANAPKNLMGQFKGITVITADRLDDAIDRAF
EI

Sequences:

>Translated_482_residues
MAKSKSSYVCQNCGAYFGKWAGQCSDCGEWNTLVEAPNVSLPHHNKSAAKGAMAAHTGPKMLAGAKSDRMNYSGSQSGVV
TLGSVNVTFDTRLPTGISEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAANMADPESLSGSALYVTGEESLSQVAMR
AQRLGLSSDHLKVMTETNVETICAALTQEQPAVAIIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQTGTALFLVGH
VTKEGTLAGPRVLEHMVDTVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPISGSIV
MVSREGTRPLLVEVQALVDDSAGQPRRMALGLDPQRLAMLLAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLAC
ASSIKERPLPSSLAVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPKANAPKNLMGQFKGITVITADRLDDAIDRAF
EI
>Mature_481_residues
AKSKSSYVCQNCGAYFGKWAGQCSDCGEWNTLVEAPNVSLPHHNKSAAKGAMAAHTGPKMLAGAKSDRMNYSGSQSGVVT
LGSVNVTFDTRLPTGISEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAANMADPESLSGSALYVTGEESLSQVAMRA
QRLGLSSDHLKVMTETNVETICAALTQEQPAVAIIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQTGTALFLVGHV
TKEGTLAGPRVLEHMVDTVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPISGSIVM
VSREGTRPLLVEVQALVDDSAGQPRRMALGLDPQRLAMLLAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLACA
SSIKERPLPSSLAVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPKANAPKNLMGQFKGITVITADRLDDAIDRAFE
I

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=481, Percent_Identity=54.2619542619543, Blast_Score=508, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 51002; Mature: 50871

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSKSSYVCQNCGAYFGKWAGQCSDCGEWNTLVEAPNVSLPHHNKSAAKGAMAAHTGPK
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCHHHCCCCH
MLAGAKSDRMNYSGSQSGVVTLGSVNVTFDTRLPTGISEFDRVLGGGLVAGSVVLIGGDP
HHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHCCCEEECEEEEEECCC
GIGKSTILLQTAANMADPESLSGSALYVTGEESLSQVAMRAQRLGLSSDHLKVMTETNVE
CCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
TICAALTQEQPAVAIIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQTGTALFLVGH
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
VTKEGTLAGPRVLEHMVDTVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEV
CCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHCEEECCCCCCHHHH
ANPSAIFLSRYDKPISGSIVMVSREGTRPLLVEVQALVDDSAGQPRRMALGLDPQRLAML
CCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEHHHHCCCCCCCCEEEECCCHHHHHHH
LAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLACASSIKERPLPSSLAVFGEVG
HHHHHHCCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
LSGEIRPVPNGQERLKEAMKHGFTHAIVPKANAPKNLMGQFKGITVITADRLDDAIDRAF
CCCCEEECCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCEEEEEHHHHHHHHHHHH
EI
CC
>Mature Secondary Structure 
AKSKSSYVCQNCGAYFGKWAGQCSDCGEWNTLVEAPNVSLPHHNKSAAKGAMAAHTGPK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCHHHCCCCH
MLAGAKSDRMNYSGSQSGVVTLGSVNVTFDTRLPTGISEFDRVLGGGLVAGSVVLIGGDP
HHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHCCCEEECEEEEEECCC
GIGKSTILLQTAANMADPESLSGSALYVTGEESLSQVAMRAQRLGLSSDHLKVMTETNVE
CCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
TICAALTQEQPAVAIIDSIQTIYTDAINSAPGGVSQIRESAAMLTRYAKQTGTALFLVGH
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
VTKEGTLAGPRVLEHMVDTVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEV
CCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHCEEECCCCCCHHHH
ANPSAIFLSRYDKPISGSIVMVSREGTRPLLVEVQALVDDSAGQPRRMALGLDPQRLAML
CCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEHHHHCCCCCCCCEEEECCCHHHHHHH
LAVMHRHGGIHTSGQDVYVNVVGGVKVMETGSDLAVLLACASSIKERPLPSSLAVFGEVG
HHHHHHCCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
LSGEIRPVPNGQERLKEAMKHGFTHAIVPKANAPKNLMGQFKGITVITADRLDDAIDRAF
CCCCEEECCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCEEEEEHHHHHHHHHHHH
EI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]