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The map label for this gene is intR [H]

Identifier: 148652536

GI number: 148652536

Start: 867005

End: 868210

Strand: Direct

Name: intR [H]

Synonym: PsycPRwf_0726

Alternate gene names: 148652536

Gene position: 867005-868210 (Clockwise)

Preceding gene: 148652535

Following gene: 148652537

Centisome position: 29.1

GC content: 41.71

Gene sequence:

>1206_bases
ATGGCTAGCATTAGAAGTAGGGGAAAAAAGCTGTTTGTTGACTTTCGATACTTAGGAGTCCGCTGTCGCGAAACAACAAA
TTTGATTGACACCCCTGAAAACCGTAAGAAGTTGCAAAAAATAATTGAAAGGATGGAAGCTGAAATTGTTTTGGGTACTT
TCAATTACGCTCAGTACTTCCCCAAGAGCGATAAAGCTTCAAAAATGATGGCTTTAAATGATCGCAAGGAGTGTATAAAC
ACAAGTATGCCGTCATTTAAGCAGTTTGCAGAGCTCTGGTTTTCAGAAAAAGAAATTGAATGGCGTGATACGTATAAACG
CAAAATCAGAGAGATTATCGATATGTACCTTCTACCTGAATTCCAGGGGAGGCCCATCGATACAATCAAAAAGACAGAGG
TATTAGCCTTCCGCTCAGCACTCGCCAAAGTAACTCGCGGAAAAGTTAAAAAACCTCTGTCAGCGGCACGCATCAACTCA
ATAATGGTACCTCTGGGTATGATACTAAAAGAAGCTTCCAAACGCTACAAGTTTGAAAATCCTTATGAGGACATAAAATC
GCTTAAGGAACCAAGAACGAGTATTCAGCCTTTCACGTTAGATGAAGTTTGGAAATTTATTAACTGGGTTAGGGAGGATT
ATCGAAACTATTATCTTGTGCGCTTCTTTACAGGCATGAGAACCAGCGAGATTGACGGTTTAACTTGGGAGAATATTGAT
TTTGACCGCCGAGAAATCGTTATCAATCAAGCACTGGTTAAAGGCAAAATTGTGCCGCCTAAAACCCAAGAGTCTTATAG
AGCCATTCAAATGTCTCCATGGGTCTATGATGCTTTAAAAGAGCAGCACAAGGTTACTTATAAGCGTTCTGAATATGTCT
TTTGTTCGCATACTGGCGAGCCGCTTGACTACAACAATGTGAATAAGCGTGTTTGGCACCCTACGCTCAAGGCATTAGGC
CTTAAAAAACGCAATGCCTATCAGACTAGGCATACTGCTGCGACTCTCTGGCTAGCTGCTGGTGAGAGCCCTGAGTGGAT
TGCTTATCAGATGGGTCATTCAACTACCAAGATGCTATTCAATACATACAGCCGCTATGTGCCTAACATGACACGGCAGG
ACGGTAGTGCTTTTGAGGCCCTCGTCAATCGTAGTCAATTGCAAATAGAAAAGAACAATAAGGAGACGCAAAATGAAGAA
GATTAA

Upstream 100 bases:

>100_bases
GGTAGAAAAATCCTTTATGTTTGGGAGGAGATTGAAAAAGATATGCGTGTCGGAGTGTCCGGCAGCATCAACGCCATGGC
ATTACAATAAGGAGGCTATT

Downstream 100 bases:

>100_bases
CCATAAAGAGCTACTTGATGAGTATAAGCCTCAAGGCCACATTAGTTCAGATGCTAACAAACTGGCTAATGGCCTTTTTC
AAGATTACTGTGTCCAAATG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MASIRSRGKKLFVDFRYLGVRCRETTNLIDTPENRKKLQKIIERMEAEIVLGTFNYAQYFPKSDKASKMMALNDRKECIN
TSMPSFKQFAELWFSEKEIEWRDTYKRKIREIIDMYLLPEFQGRPIDTIKKTEVLAFRSALAKVTRGKVKKPLSAARINS
IMVPLGMILKEASKRYKFENPYEDIKSLKEPRTSIQPFTLDEVWKFINWVREDYRNYYLVRFFTGMRTSEIDGLTWENID
FDRREIVINQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQHKVTYKRSEYVFCSHTGEPLDYNNVNKRVWHPTLKALG
LKKRNAYQTRHTAATLWLAAGESPEWIAYQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQLQIEKNNKETQNEE
D

Sequences:

>Translated_401_residues
MASIRSRGKKLFVDFRYLGVRCRETTNLIDTPENRKKLQKIIERMEAEIVLGTFNYAQYFPKSDKASKMMALNDRKECIN
TSMPSFKQFAELWFSEKEIEWRDTYKRKIREIIDMYLLPEFQGRPIDTIKKTEVLAFRSALAKVTRGKVKKPLSAARINS
IMVPLGMILKEASKRYKFENPYEDIKSLKEPRTSIQPFTLDEVWKFINWVREDYRNYYLVRFFTGMRTSEIDGLTWENID
FDRREIVINQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQHKVTYKRSEYVFCSHTGEPLDYNNVNKRVWHPTLKALG
LKKRNAYQTRHTAATLWLAAGESPEWIAYQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQLQIEKNNKETQNEE
D
>Mature_400_residues
ASIRSRGKKLFVDFRYLGVRCRETTNLIDTPENRKKLQKIIERMEAEIVLGTFNYAQYFPKSDKASKMMALNDRKECINT
SMPSFKQFAELWFSEKEIEWRDTYKRKIREIIDMYLLPEFQGRPIDTIKKTEVLAFRSALAKVTRGKVKKPLSAARINSI
MVPLGMILKEASKRYKFENPYEDIKSLKEPRTSIQPFTLDEVWKFINWVREDYRNYYLVRFFTGMRTSEIDGLTWENIDF
DRREIVINQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQHKVTYKRSEYVFCSHTGEPLDYNNVNKRVWHPTLKALGL
KKRNAYQTRHTAATLWLAAGESPEWIAYQMGHSTTKMLFNTYSRYVPNMTRQDGSAFEALVNRSQLQIEKNNKETQNEED

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=411, Percent_Identity=24.8175182481752, Blast_Score=131, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47386; Mature: 47255

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIRSRGKKLFVDFRYLGVRCRETTNLIDTPENRKKLQKIIERMEAEIVLGTFNYAQYF
CCCCHHCCCEEEEEEHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECHHHHHC
PKSDKASKMMALNDRKECINTSMPSFKQFAELWFSEKEIEWRDTYKRKIREIIDMYLLPE
CCCCCHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
FQGRPIDTIKKTEVLAFRSALAKVTRGKVKKPLSAARINSIMVPLGMILKEASKRYKFEN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PYEDIKSLKEPRTSIQPFTLDEVWKFINWVREDYRNYYLVRFFTGMRTSEIDGLTWENID
CHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCC
FDRREIVINQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQHKVTYKRSEYVFCSHTGE
CCHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCHHHHHHHHHHHHEEECCCEEEEECCCC
PLDYNNVNKRVWHPTLKALGLKKRNAYQTRHTAATLWLAAGESPEWIAYQMGHSTTKMLF
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCEEEEECCCHHHHHHH
NTYSRYVPNMTRQDGSAFEALVNRSQLQIEKNNKETQNEED
HHHHHHCCCCCCCCCHHHHHHHCCHHEEEECCCCCCCCCCC
>Mature Secondary Structure 
ASIRSRGKKLFVDFRYLGVRCRETTNLIDTPENRKKLQKIIERMEAEIVLGTFNYAQYF
CCCHHCCCEEEEEEHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECHHHHHC
PKSDKASKMMALNDRKECINTSMPSFKQFAELWFSEKEIEWRDTYKRKIREIIDMYLLPE
CCCCCHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
FQGRPIDTIKKTEVLAFRSALAKVTRGKVKKPLSAARINSIMVPLGMILKEASKRYKFEN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PYEDIKSLKEPRTSIQPFTLDEVWKFINWVREDYRNYYLVRFFTGMRTSEIDGLTWENID
CHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCC
FDRREIVINQALVKGKIVPPKTQESYRAIQMSPWVYDALKEQHKVTYKRSEYVFCSHTGE
CCHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCHHHHHHHHHHHHEEECCCEEEEECCCC
PLDYNNVNKRVWHPTLKALGLKKRNAYQTRHTAATLWLAAGESPEWIAYQMGHSTTKMLF
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCEEEEECCCHHHHHHH
NTYSRYVPNMTRQDGSAFEALVNRSQLQIEKNNKETQNEED
HHHHHHCCCCCCCCCHHHHHHHCCHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]