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The map label for this gene is ydeP [H]

Identifier: 148652146

GI number: 148652146

Start: 402172

End: 404508

Strand: Direct

Name: ydeP [H]

Synonym: PsycPRwf_0334

Alternate gene names: 148652146

Gene position: 402172-404508 (Clockwise)

Preceding gene: 148652145

Following gene: 148652147

Centisome position: 13.5

GC content: 49.55

Gene sequence:

>2337_bases
ATGCGAAAGATACCGGTTTATAACCACCCCGCTGCGGGTTGGTCGGCGTTGATTGATTCTTCTCGTGTGCTTATGGATTA
TAAGGCTTTTTTGCGCGGCAGCTTAAGTGTGTTTGGCAGCAACCAGCCCAATGGCGGTTTTGATTGCCCAGGCTGTGCAT
GGCCTGATCACAAATCGCATAAGACCATAGATGTCTGCGAGACGGGCATTAAGGTATTAGCCAGTGAGGTCATGAGCGCT
AAGGCCGATGCTGAGTTTTTTGCCAAGCATACCGTCAGCGAGCTGCAAGGCTATAGTGGTCATGAGCTTGAACAAGTAGG
TCGTTTGGCTCAGCCCTTACAATACGATGCCAGTCAAGATAGGTATGTCCCCATTGCGTGGGAGGCCGCTTTTGAGCGTG
TGGCTGAACACTTACACCGTCTTGAGTCACCGCATCAAGCGATGTTCTATACTTCGGGCCGAGTGACCAACGAGCCGGCC
TTTTTATTTCAACTGTTTGTTCGCAGCTTCGGCACCAATAACTTACCTGATTGCTCAAACATGTGCCATGAGCCAACCTC
AGTAATGCTCAGTCGTCAGCTGGGCGTGGGCAAAGCGACTGTGGTATTAGAAGATTTCGAGCAGGCTAAACTGATATTGA
TGTTCGGCCAAAACCCTGCTACCAATCATCCTCGTATGCTCGAGATGCTGGCACACGCTCATGAGCAAGGCTGCCGCATA
ATCTCGATTAATCCGATGCGCGAGCAAGGGCTTAGCCGCTTTAGAAATCCACAAAAAGTGACCCATATGGTCAGTGGTGG
CAGTGACCCTATGGTAGATGAGGTCATCCAAATCCAAATTGGTGGTGATGTGGCACTGCTCACGGGCCTTGCCAAATGGC
TGATTGAGAATGACAACATAAACCATGAATTTATTGATCAGCATACCTCAGGCTTTGATGCCTTAAAAGCATGGGTTATG
ACCCAAAACTGGGCAGATATTGAGCGTGGCTGCGGCATTGACCAAGCTAAGATTGTGAGTCTTGCACAGCTGGTGGCGGA
TAGCCCCGCGACCATTTGCACTTGGGGTATGGGGATTACCCAGCACGTCCAAGGTGATGACAATGTGGCCATGATTACCA
ACTTGCTGCTTATGATGGGTATGATAGGCATAACGGGTGCCGGTGCTTCTCCGGTACGTGGCCACTCCAATGTGCAAGGC
GATCGCACTATGGGTATTCATGAACGCCCATCTCAGGCGCTGTTAGACAGATTACAGCAGGTATTTGAGCGCCCGATGCC
ACAAGAGCACGGCTACGATGTGGTGTCCGGTGCTAAAGCCATGATACAAAAAAAGATAAAAGTATTTATGAGTATGGGTG
GCAACTTCTCAGTGGCTGCGCCTGATACGCATGCCATCCAGCACGCTTTAACTGATAATCAGCTCAATGTCTTTGTGGGT
ACCAAGCTTAATGAAAGCATGCTGTATCCAGGCGAGGACAGTTTAATTCTACCGTGCTTAAGCCGCACTGAACGCTATAT
TACTAGCCGCGGAGAGCAGTTTGCCACTATTGAGGATTCGATGTGTCAAGTGGTCAGAACTCAAGGCCGCCTAAAGCCAA
TGAGCGATCATCTAAAGTCGGAGGCACAGATTGTGGCCGGTATAGCGAACGCCTTTTTTGGTAAAGACACCTCTATTAAT
TGGTCGATGATGGCAGAAGACTATGATGTGACACGCAATTATATTTCTCAGGCAATCAAAGGCTTTGAGAACTTTAATCA
GCGCATTCGTGAAGTGGAGCGCGGATTTCATCTGTATCACCCAGCCCGTCATCATAAGTGGGAGACTGAGTCGGGTAAAG
CGCAGTTTGAGGTGCCAAAATACGACATTACGTATGTGGCAGATGAGATGGCCAGCCAGGCAGATACCAAAGCGGATCCT
GCCCGAGCGCAGATGGTCTGGCAGCTGACCACAGTACGCAGCCATGATCAGTTTAATACCACCATCTTTGGTCTTGAGGA
CAGGTATCGTCAGACCACGCATCGTGATGTGCTATTTATGCACCCTGATGAGATAAGCCGTCTGGGTTGGCAAGCGGGTG
ATAAAGTAGTGGTGTCACGAGTCGACAGTCAAGGCGGTGCTCGCAGCTTAGGCCCTTTGGTATTGACCCAAATGGACATT
GCGGCCAATGCGGTGGCGGCTTATTATCCTGAGTGTAATGACTTGATAGACTTAGACAGTCATGCCTTGGAGTCTTTAAC
GCCCTCCTACAAGTCGGTTACGGTTACCTTAAAAAAGGTAGACTTAGATGAACAACAACAAGCGATATCCGAGCCCAGCA
CTACAGCGACCGCTTAA

Upstream 100 bases:

>100_bases
AGCCAGCCTTTGTGTGAATACGACTCATACAATACAGTAAATATAAGGCGTTATACTAAACTTGGGTTAATAAACACTGT
TTTTGGTAATAAGGATTGTT

Downstream 100 bases:

>100_bases
TGATGACCGATTTAACACTAATTAAGGCGATATGGACAATACAGCAGCACATTTTGACTCACAGATAGGCGTGCCGGTGG
AGTTACAACGCCGGCTGACT

Product: oxidoreductase alpha (molybdopterin) subunit

Products: CO2; NADH

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 778

Protein sequence:

>778_residues
MRKIPVYNHPAAGWSALIDSSRVLMDYKAFLRGSLSVFGSNQPNGGFDCPGCAWPDHKSHKTIDVCETGIKVLASEVMSA
KADAEFFAKHTVSELQGYSGHELEQVGRLAQPLQYDASQDRYVPIAWEAAFERVAEHLHRLESPHQAMFYTSGRVTNEPA
FLFQLFVRSFGTNNLPDCSNMCHEPTSVMLSRQLGVGKATVVLEDFEQAKLILMFGQNPATNHPRMLEMLAHAHEQGCRI
ISINPMREQGLSRFRNPQKVTHMVSGGSDPMVDEVIQIQIGGDVALLTGLAKWLIENDNINHEFIDQHTSGFDALKAWVM
TQNWADIERGCGIDQAKIVSLAQLVADSPATICTWGMGITQHVQGDDNVAMITNLLLMMGMIGITGAGASPVRGHSNVQG
DRTMGIHERPSQALLDRLQQVFERPMPQEHGYDVVSGAKAMIQKKIKVFMSMGGNFSVAAPDTHAIQHALTDNQLNVFVG
TKLNESMLYPGEDSLILPCLSRTERYITSRGEQFATIEDSMCQVVRTQGRLKPMSDHLKSEAQIVAGIANAFFGKDTSIN
WSMMAEDYDVTRNYISQAIKGFENFNQRIREVERGFHLYHPARHHKWETESGKAQFEVPKYDITYVADEMASQADTKADP
ARAQMVWQLTTVRSHDQFNTTIFGLEDRYRQTTHRDVLFMHPDEISRLGWQAGDKVVVSRVDSQGGARSLGPLVLTQMDI
AANAVAAYYPECNDLIDLDSHALESLTPSYKSVTVTLKKVDLDEQQQAISEPSTTATA

Sequences:

>Translated_778_residues
MRKIPVYNHPAAGWSALIDSSRVLMDYKAFLRGSLSVFGSNQPNGGFDCPGCAWPDHKSHKTIDVCETGIKVLASEVMSA
KADAEFFAKHTVSELQGYSGHELEQVGRLAQPLQYDASQDRYVPIAWEAAFERVAEHLHRLESPHQAMFYTSGRVTNEPA
FLFQLFVRSFGTNNLPDCSNMCHEPTSVMLSRQLGVGKATVVLEDFEQAKLILMFGQNPATNHPRMLEMLAHAHEQGCRI
ISINPMREQGLSRFRNPQKVTHMVSGGSDPMVDEVIQIQIGGDVALLTGLAKWLIENDNINHEFIDQHTSGFDALKAWVM
TQNWADIERGCGIDQAKIVSLAQLVADSPATICTWGMGITQHVQGDDNVAMITNLLLMMGMIGITGAGASPVRGHSNVQG
DRTMGIHERPSQALLDRLQQVFERPMPQEHGYDVVSGAKAMIQKKIKVFMSMGGNFSVAAPDTHAIQHALTDNQLNVFVG
TKLNESMLYPGEDSLILPCLSRTERYITSRGEQFATIEDSMCQVVRTQGRLKPMSDHLKSEAQIVAGIANAFFGKDTSIN
WSMMAEDYDVTRNYISQAIKGFENFNQRIREVERGFHLYHPARHHKWETESGKAQFEVPKYDITYVADEMASQADTKADP
ARAQMVWQLTTVRSHDQFNTTIFGLEDRYRQTTHRDVLFMHPDEISRLGWQAGDKVVVSRVDSQGGARSLGPLVLTQMDI
AANAVAAYYPECNDLIDLDSHALESLTPSYKSVTVTLKKVDLDEQQQAISEPSTTATA
>Mature_778_residues
MRKIPVYNHPAAGWSALIDSSRVLMDYKAFLRGSLSVFGSNQPNGGFDCPGCAWPDHKSHKTIDVCETGIKVLASEVMSA
KADAEFFAKHTVSELQGYSGHELEQVGRLAQPLQYDASQDRYVPIAWEAAFERVAEHLHRLESPHQAMFYTSGRVTNEPA
FLFQLFVRSFGTNNLPDCSNMCHEPTSVMLSRQLGVGKATVVLEDFEQAKLILMFGQNPATNHPRMLEMLAHAHEQGCRI
ISINPMREQGLSRFRNPQKVTHMVSGGSDPMVDEVIQIQIGGDVALLTGLAKWLIENDNINHEFIDQHTSGFDALKAWVM
TQNWADIERGCGIDQAKIVSLAQLVADSPATICTWGMGITQHVQGDDNVAMITNLLLMMGMIGITGAGASPVRGHSNVQG
DRTMGIHERPSQALLDRLQQVFERPMPQEHGYDVVSGAKAMIQKKIKVFMSMGGNFSVAAPDTHAIQHALTDNQLNVFVG
TKLNESMLYPGEDSLILPCLSRTERYITSRGEQFATIEDSMCQVVRTQGRLKPMSDHLKSEAQIVAGIANAFFGKDTSIN
WSMMAEDYDVTRNYISQAIKGFENFNQRIREVERGFHLYHPARHHKWETESGKAQFEVPKYDITYVADEMASQADTKADP
ARAQMVWQLTTVRSHDQFNTTIFGLEDRYRQTTHRDVLFMHPDEISRLGWQAGDKVVVSRVDSQGGARSLGPLVLTQMDI
AANAVAAYYPECNDLIDLDSHALESLTPSYKSVTVTLKKVDLDEQQQAISEPSTTATA

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=770, Percent_Identity=42.0779220779221, Blast_Score=603, Evalue=1e-173,
Organism=Escherichia coli, GI3868721, Length=367, Percent_Identity=26.7029972752044, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI3868719, Length=402, Percent_Identity=24.1293532338308, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI3868720, Length=438, Percent_Identity=21.689497716895, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87081797, Length=555, Percent_Identity=22.5225225225225, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081994, Length=386, Percent_Identity=21.7616580310881, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: 1.2.1.2

Molecular weight: Translated: 86521; Mature: 86521

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIPVYNHPAAGWSALIDSSRVLMDYKAFLRGSLSVFGSNQPNGGFDCPGCAWPDHKSH
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCC
KTIDVCETGIKVLASEVMSAKADAEFFAKHTVSELQGYSGHELEQVGRLAQPLQYDASQD
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHCCCCCC
RYVPIAWEAAFERVAEHLHRLESPHQAMFYTSGRVTNEPAFLFQLFVRSFGTNNLPDCSN
CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHH
MCHEPTSVMLSRQLGVGKATVVLEDFEQAKLILMFGQNPATNHPRMLEMLAHAHEQGCRI
HCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEE
ISINPMREQGLSRFRNPQKVTHMVSGGSDPMVDEVIQIQIGGDVALLTGLAKWLIENDNI
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
NHEFIDQHTSGFDALKAWVMTQNWADIERGCGIDQAKIVSLAQLVADSPATICTWGMGIT
CHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
QHVQGDDNVAMITNLLLMMGMIGITGAGASPVRGHSNVQGDRTMGIHERPSQALLDRLQQ
EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VFERPMPQEHGYDVVSGAKAMIQKKIKVFMSMGGNFSVAAPDTHAIQHALTDNQLNVFVG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEEE
TKLNESMLYPGEDSLILPCLSRTERYITSRGEQFATIEDSMCQVVRTQGRLKPMSDHLKS
CCCCCCEECCCCCCEEEHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHH
EAQIVAGIANAFFGKDTSINWSMMAEDYDVTRNYISQAIKGFENFNQRIREVERGFHLYH
HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
PARHHKWETESGKAQFEVPKYDITYVADEMASQADTKADPARAQMVWQLTTVRSHDQFNT
CHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHEEEEHHHCCCCCCCC
TIFGLEDRYRQTTHRDVLFMHPDEISRLGWQAGDKVVVSRVDSQGGARSLGPLVLTQMDI
EEEECHHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
AANAVAAYYPECNDLIDLDSHALESLTPSYKSVTVTLKKVDLDEQQQAISEPSTTATA
HHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRKIPVYNHPAAGWSALIDSSRVLMDYKAFLRGSLSVFGSNQPNGGFDCPGCAWPDHKSH
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCC
KTIDVCETGIKVLASEVMSAKADAEFFAKHTVSELQGYSGHELEQVGRLAQPLQYDASQD
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHCCCCCC
RYVPIAWEAAFERVAEHLHRLESPHQAMFYTSGRVTNEPAFLFQLFVRSFGTNNLPDCSN
CEEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHH
MCHEPTSVMLSRQLGVGKATVVLEDFEQAKLILMFGQNPATNHPRMLEMLAHAHEQGCRI
HCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEE
ISINPMREQGLSRFRNPQKVTHMVSGGSDPMVDEVIQIQIGGDVALLTGLAKWLIENDNI
EEECCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
NHEFIDQHTSGFDALKAWVMTQNWADIERGCGIDQAKIVSLAQLVADSPATICTWGMGIT
CHHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
QHVQGDDNVAMITNLLLMMGMIGITGAGASPVRGHSNVQGDRTMGIHERPSQALLDRLQQ
EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
VFERPMPQEHGYDVVSGAKAMIQKKIKVFMSMGGNFSVAAPDTHAIQHALTDNQLNVFVG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEEEE
TKLNESMLYPGEDSLILPCLSRTERYITSRGEQFATIEDSMCQVVRTQGRLKPMSDHLKS
CCCCCCEECCCCCCEEEHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHH
EAQIVAGIANAFFGKDTSINWSMMAEDYDVTRNYISQAIKGFENFNQRIREVERGFHLYH
HHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
PARHHKWETESGKAQFEVPKYDITYVADEMASQADTKADPARAQMVWQLTTVRSHDQFNT
CHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHEEEEHHHCCCCCCCC
TIFGLEDRYRQTTHRDVLFMHPDEISRLGWQAGDKVVVSRVDSQGGARSLGPLVLTQMDI
EEEECHHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
AANAVAAYYPECNDLIDLDSHALESLTPSYKSVTVTLKKVDLDEQQQAISEPSTTATA
HHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]