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The map label for this gene is cspE [H]

Identifier: 148652145

GI number: 148652145

Start: 401654

End: 401863

Strand: Direct

Name: cspE [H]

Synonym: PsycPRwf_0333

Alternate gene names: 148652145

Gene position: 401654-401863 (Clockwise)

Preceding gene: 148652144

Following gene: 148652146

Centisome position: 13.48

GC content: 43.81

Gene sequence:

>210_bases
ATGTCAGATACTATCAAAGGTACAGTAAAGTGGTTTAACGAAGCTAAAGGTTTTGGCTTTATCGCTCCAGAAACTGGTCC
AGACGTTTTCGCTCATTACAGCGAAATCGCAAGCTCAGGTTTCAAAACTTTAGCTGAAGGCCAAGAAGTTGAGTTCACCG
TAACTCAAGGTGCTAAAGGCCCACAAGCCCACGGTATCACAGCTATCTAA

Upstream 100 bases:

>100_bases
CGTAGTATTAGCATTAATCCTCCGTTTTAAGATTTACCGTAGTTGCTCAGAGCGTTACCGACCAAATTGGTCATTATGTT
TTAAAATTAGGATTATATAT

Downstream 100 bases:

>100_bases
TTAGCGATGATGATTTAAAGTGGTGATCATTAAACACTCATTACTTTAGATGAATCAAAAAACGAGCCTTTGGCTCGTTT
TTTTTCGTCTTAATTATTTA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSDTIKGTVKWFNEAKGFGFIAPETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKGPQAHGITAI

Sequences:

>Translated_69_residues
MSDTIKGTVKWFNEAKGFGFIAPETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKGPQAHGITAI
>Mature_68_residues
SDTIKGTVKWFNEAKGFGFIAPETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKGPQAHGITAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=66.6666666666667, Blast_Score=92, Evalue=6e-21,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=65.1515151515152, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=54.2857142857143, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=55.7142857142857, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=60, Blast_Score=77, Evalue=1e-16,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=52.2388059701493, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7305; Mature: 7174

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTIKGTVKWFNEAKGFGFIAPETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKG
CCCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
PQAHGITAI
CCCCCCCCC
>Mature Secondary Structure 
SDTIKGTVKWFNEAKGFGFIAPETGPDVFAHYSEIASSGFKTLAEGQEVEFTVTQGAKG
CCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
PQAHGITAI
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]