Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 148652139

GI number: 148652139

Start: 394133

End: 395731

Strand: Direct

Name: cydA [H]

Synonym: PsycPRwf_0327

Alternate gene names: 148652139

Gene position: 394133-395731 (Clockwise)

Preceding gene: 148652136

Following gene: 148652140

Centisome position: 13.23

GC content: 46.47

Gene sequence:

>1599_bases
ATGATTACTGAACATCTCGTTGATATATCCCGCTTGCAATTTGCGGTAACAGCGCTTTACCACTTTTTATTTGTTCCGTT
AACCTTGGGTATGGTTTGGATTCTGGTGATTATGGAGTCCGTCTATGTCACAACCGGTAATCCAATCTGGAAGGACATGA
CCAAATACTGGGGAAAGCTCTTTGGTATTAACTTCGCTTTAGGGGTGACCACAGGGATTACCATGGAGTTCCAGTTCGGG
ACCAACTGGGCCTATTATTCTCATTACGTTGGGGACATCTTCGGTGCGCCACTGGCCATTGAGGGTCTTATGGCCTTCTT
CTTAGAGTCTACCATGGTGGGCCTATTCTTCTTCGGTTGGGATAGACTCTCGCGCGCTCAGCATTTGATTGTCACTATGC
TAATGGCGCTTGGTACCAACTTGTCTGCGCTGTGGATCTTGATTGCCAACGGCTGGATGCAAAGCCCTGTAGGCGCATCA
TTTAGCTACGAAACCATGCGTATGGAGATGGACAGCTTCGCAACCATCTTATTTAACCCTGATGCCCAAAACAAATTCGT
ACATACGGTATCAGCCGGTTATGTCACCGCCTCTATGTTCGTTTTATCCATCTCAGCTTTATACCTACTACGCAAACGTG
ACGTGCCTTTTGCCAAGCGTAGCTTTCAGGTAGCCTCAGCCTTTGGTATGGCTTCAATCTTAAGTGTTATCGTGTTGGGT
GATGAATCAGGCTACTCTATTGGCGCCGCTCAGCAAACCAAGATGGCGACGATTGAAGCCATGTGGCACACCGAGCCTGC
CCCTGCGTCCTTTAACCTGATTGCAGGTATTAATGAAAAAGAGCAAAAAAACGATTGGCAAATCCAAATTCCTTATGCCA
TGGGTATTATCGGTACGCGATCTTTAGATAAAGAAATCCCAGGTATTCATGAGATTAAAGAGGTCAACCGAGGCCGCATT
ATGAATGGGATGCAGGCAGTGGACTTACTTGAGCAGCTACGTGAAAATCCACAAGATGCCGCCTTAAAGACCCAGTTTGA
AGCGGTAAAAGAAGACCTAGGCTTTGGCTTATTGCTTAAAAAATACACCGAAGATGTCACTCAAGCTACCCCTGATATGA
TCCAAAAAGCAGTGGATGACACCATTCCAGCGGTGAAGCCTATGTTCTGGTCATTCCGTGGTATGGTGGGGCTAGGCTTC
TTGATGCTGGCGTTATTTGCAGTGAGCATGTGGCATACCATTAAAGGCAACTTTGCAGAAAAAACTTGGCTATTAAAGTG
GGCGGTAATTATGTTGCCTGCACCTTGGATTGCCATTGAGCTTGGTTGGTTCGTAGCCGAGTATGGCCGTCAGCCTTGGA
CTATTTATGGGGTACTTCCGACCTATTTATCAGTAACTAACTTCAGTGTGGCCAACGTTTATGGCTCATTGGCAGGCTTT
GTCGGTTTTTATACCATCTTGCTAATTATCGAAGTCTATCTGATGGTGAAGTATGTCAAGCTAGGCCCAGCCAGTTTAGG
CACCGGCCGTTATGATGGGGAAACCCCACGTAATGTGACCCCAGTGCATAGCAATAAGGAGGTCAACGATGTTATTTGA

Upstream 100 bases:

>100_bases
TAATTAGGGCGGATGAGCAAGGATGTGAGTGGACAGTAGGCCCTATGTTGTGCAGCTCAAATGATGGTGTGAATTAGTCC
TTCTTTTTAGGAGGTTTGGT

Downstream 100 bases:

>100_bases
TTATGCAACTTTAAAATTAATCTGGTGGCTATTGGTTGGCGTATTGCTTATCGGCTTTGCCATTATGGATGGTCACGACA
TGGGCGTAGGCTCCTTACTG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MITEHLVDISRLQFAVTALYHFLFVPLTLGMVWILVIMESVYVTTGNPIWKDMTKYWGKLFGINFALGVTTGITMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTMVGLFFFGWDRLSRAQHLIVTMLMALGTNLSALWILIANGWMQSPVGAS
FSYETMRMEMDSFATILFNPDAQNKFVHTVSAGYVTASMFVLSISALYLLRKRDVPFAKRSFQVASAFGMASILSVIVLG
DESGYSIGAAQQTKMATIEAMWHTEPAPASFNLIAGINEKEQKNDWQIQIPYAMGIIGTRSLDKEIPGIHEIKEVNRGRI
MNGMQAVDLLEQLRENPQDAALKTQFEAVKEDLGFGLLLKKYTEDVTQATPDMIQKAVDDTIPAVKPMFWSFRGMVGLGF
LMLALFAVSMWHTIKGNFAEKTWLLKWAVIMLPAPWIAIELGWFVAEYGRQPWTIYGVLPTYLSVTNFSVANVYGSLAGF
VGFYTILLIIEVYLMVKYVKLGPASLGTGRYDGETPRNVTPVHSNKEVNDVI

Sequences:

>Translated_532_residues
MITEHLVDISRLQFAVTALYHFLFVPLTLGMVWILVIMESVYVTTGNPIWKDMTKYWGKLFGINFALGVTTGITMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTMVGLFFFGWDRLSRAQHLIVTMLMALGTNLSALWILIANGWMQSPVGAS
FSYETMRMEMDSFATILFNPDAQNKFVHTVSAGYVTASMFVLSISALYLLRKRDVPFAKRSFQVASAFGMASILSVIVLG
DESGYSIGAAQQTKMATIEAMWHTEPAPASFNLIAGINEKEQKNDWQIQIPYAMGIIGTRSLDKEIPGIHEIKEVNRGRI
MNGMQAVDLLEQLRENPQDAALKTQFEAVKEDLGFGLLLKKYTEDVTQATPDMIQKAVDDTIPAVKPMFWSFRGMVGLGF
LMLALFAVSMWHTIKGNFAEKTWLLKWAVIMLPAPWIAIELGWFVAEYGRQPWTIYGVLPTYLSVTNFSVANVYGSLAGF
VGFYTILLIIEVYLMVKYVKLGPASLGTGRYDGETPRNVTPVHSNKEVNDVI
>Mature_532_residues
MITEHLVDISRLQFAVTALYHFLFVPLTLGMVWILVIMESVYVTTGNPIWKDMTKYWGKLFGINFALGVTTGITMEFQFG
TNWAYYSHYVGDIFGAPLAIEGLMAFFLESTMVGLFFFGWDRLSRAQHLIVTMLMALGTNLSALWILIANGWMQSPVGAS
FSYETMRMEMDSFATILFNPDAQNKFVHTVSAGYVTASMFVLSISALYLLRKRDVPFAKRSFQVASAFGMASILSVIVLG
DESGYSIGAAQQTKMATIEAMWHTEPAPASFNLIAGINEKEQKNDWQIQIPYAMGIIGTRSLDKEIPGIHEIKEVNRGRI
MNGMQAVDLLEQLRENPQDAALKTQFEAVKEDLGFGLLLKKYTEDVTQATPDMIQKAVDDTIPAVKPMFWSFRGMVGLGF
LMLALFAVSMWHTIKGNFAEKTWLLKWAVIMLPAPWIAIELGWFVAEYGRQPWTIYGVLPTYLSVTNFSVANVYGSLAGF
VGFYTILLIIEVYLMVKYVKLGPASLGTGRYDGETPRNVTPVHSNKEVNDVI

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=515, Percent_Identity=60.3883495145631, Blast_Score=665, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=501, Percent_Identity=52.4950099800399, Blast_Score=548, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59547; Mature: 59547

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITEHLVDISRLQFAVTALYHFLFVPLTLGMVWILVIMESVYVTTGNPIWKDMTKYWGKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FGINFALGVTTGITMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTMVGLFFFGW
HCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRLSRAQHLIVTMLMALGTNLSALWILIANGWMQSPVGASFSYETMRMEMDSFATILFNP
HHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCEEEEECC
DAQNKFVHTVSAGYVTASMFVLSISALYLLRKRDVPFAKRSFQVASAFGMASILSVIVLG
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYSIGAAQQTKMATIEAMWHTEPAPASFNLIAGINEKEQKNDWQIQIPYAMGIIGTR
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEECHHCCCCCCC
SLDKEIPGIHEIKEVNRGRIMNGMQAVDLLEQLRENPQDAALKTQFEAVKEDLGFGLLLK
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
KYTEDVTQATPDMIQKAVDDTIPAVKPMFWSFRGMVGLGFLMLALFAVSMWHTIKGNFAE
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KTWLLKWAVIMLPAPWIAIELGWFVAEYGRQPWTIYGVLPTYLSVTNFSVANVYGSLAGF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHH
VGFYTILLIIEVYLMVKYVKLGPASLGTGRYDGETPRNVTPVHSNKEVNDVI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MITEHLVDISRLQFAVTALYHFLFVPLTLGMVWILVIMESVYVTTGNPIWKDMTKYWGKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHH
FGINFALGVTTGITMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTMVGLFFFGW
HCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRLSRAQHLIVTMLMALGTNLSALWILIANGWMQSPVGASFSYETMRMEMDSFATILFNP
HHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHCEEEEECC
DAQNKFVHTVSAGYVTASMFVLSISALYLLRKRDVPFAKRSFQVASAFGMASILSVIVLG
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYSIGAAQQTKMATIEAMWHTEPAPASFNLIAGINEKEQKNDWQIQIPYAMGIIGTR
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEECHHCCCCCCC
SLDKEIPGIHEIKEVNRGRIMNGMQAVDLLEQLRENPQDAALKTQFEAVKEDLGFGLLLK
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
KYTEDVTQATPDMIQKAVDDTIPAVKPMFWSFRGMVGLGFLMLALFAVSMWHTIKGNFAE
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
KTWLLKWAVIMLPAPWIAIELGWFVAEYGRQPWTIYGVLPTYLSVTNFSVANVYGSLAGF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHH
VGFYTILLIIEVYLMVKYVKLGPASLGTGRYDGETPRNVTPVHSNKEVNDVI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]