Click here to switch to the map view.

The map label for this gene is ompA [H]

Identifier: 148652125

GI number: 148652125

Start: 373860

End: 375473

Strand: Direct

Name: ompA [H]

Synonym: PsycPRwf_0313

Alternate gene names: 148652125

Gene position: 373860-375473 (Clockwise)

Preceding gene: 148652123

Following gene: 148652127

Centisome position: 12.55

GC content: 45.85

Gene sequence:

>1614_bases
ATGGATATTATTGGTCACTTGGCTCGTACCGTTACCCCAGCTGTTCTGGCTGACAATCATAACCCACAAAACGAAAGCTT
ATTAAAGCAGTTTTACGCTTTATTCATCGCTAAACTAGCCGATCAGGAGAGCTTTACTCGTGTAGGCTCACAAGAGATTC
ATCGTGATGACTTAGGTCTGTTCGATCGTCTATGGACTGATGAAGGCCAAAAAAATCACATTGCTGAAGAATTAGCGGCT
CATAATAACGTAGATACCATTTCAGTAAAGGGCCTGATAGCTTCAGCAGCGCCTTTGGCTTTTAATGAAATCAAAAGCTT
AGCGGGTAGTGTACCTATTCCTCAGTTTTTACGTGATAACCTAGAGTCATATCGTAATCATATCCCTACTTGGGCAACCA
GCGTTCTGCCTGCCGGTCTACTAGGCCTAGGCGCTAGTGCAGCCGGTGCTCATGCCGCTCATGCCACCACAACCAATACC
ACAGCGACACCTGCTGGCCATCGTATTTCTGATACCACCAGTACTGAGCCTTTGGTACGTGAAGAAAAAGAAAGTGGCGG
CTTCTTAAAAGCATTATTGCCTATTATTGGTTTAATTATCCTAGCGGCGCTAGCGTGGGCACTATTAAAAGGTTGCCAAA
AAGATCCTGCACCTGTGGCTACACCAGAGCAAACGGTACAGCAGCCTGCTGAACCTGCAGTTACCGGTAATACCGCGCTA
GCACCTGCAGTGTTAAGTCTTGCTACTGGCGAAGGCAATGAGTTATTCGCTTGTCGTATCAATGCAGGTAATGAAGAGTT
AAGCAACACAGTAATGACGGCTGTAAAAGATGTGTTTGGCACAGGTGGTGATAACTGCCGCGCAGACATCGATGATGGCT
TTGCCACTGACATGCCAGCGGCACCGCACTTAGCTGCTATTTTACCTCTCATCAAAAATACACCTAATGCTAACGTGATT
ATCGAAGGCAATGATGTGCGTATTGATGCGCCAGATCAAGCTCAGCTAGACAAGCTAGTGGCTGATATTAAAGCCGCTGC
TCCGGAGCTTAATGTCGTTGCAACCGGTCCTGTAGACTTTGATGCTGAAGTGAAACAAAGTATCGCAGATGCCACGACAG
CTATGGATAACCTAGGTGAAAATCCAGATCCAAAAGATGTGGCTCGTGCACTAAGCTTACAAGTTATTAACTTTGCAGTA
GATAAAACAGACATCCCAGCTGAAAACCAAGCGGTACTAGATCGTGCGGTAGAAGTTATGAAGCAAGTACCTGATATGCA
GCTGCTAATCTTAGGTCATACTGACAGCGATGGTGATGATGCTTATAACAAAGATCTATCTCAGCGCCGTGCAGAAGCGG
TAAAAGCCTACTTGGTATCTAAAGGTGCCGATGCTGCTAAGCTAATGACCAAAGGTATGGGTGAAACAGACCCTATAGCC
ACTAACGAAACAGAAAACGGTAAATTCCGCAACCGTCGTATCGAGTTTACGGTATATGATGAAAGTGTAGCGGGTATGGA
TACACCGATTACTGTAACACCATCAGACAGTGCAGATATCAAAGCACCTACTGCTGAGGCTACAACTGAGCCACAAGCTG
ACACTGCTCAGTAA

Upstream 100 bases:

>100_bases
CGGCTTTAGGCGTTCATTAGACGTTAAGTTAATAACAATTAATCTGCTCCCTTTAACTGCTGATTACCCAATATTTTTTA
ATTTTTTAGGAGAGTTACTC

Downstream 100 bases:

>100_bases
TCAGTAAGTGGTTAGCTTTAAGCGCTATAAAATAAGTAGCCATAAATAATGTATCGTCAGTATTGCTTGCTGTGGTTGGT
CAAGCAGCTGACACAAAAAG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MDIIGHLARTVTPAVLADNHNPQNESLLKQFYALFIAKLADQESFTRVGSQEIHRDDLGLFDRLWTDEGQKNHIAEELAA
HNNVDTISVKGLIASAAPLAFNEIKSLAGSVPIPQFLRDNLESYRNHIPTWATSVLPAGLLGLGASAAGAHAAHATTTNT
TATPAGHRISDTTSTEPLVREEKESGGFLKALLPIIGLIILAALAWALLKGCQKDPAPVATPEQTVQQPAEPAVTGNTAL
APAVLSLATGEGNELFACRINAGNEELSNTVMTAVKDVFGTGGDNCRADIDDGFATDMPAAPHLAAILPLIKNTPNANVI
IEGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDFDAEVKQSIADATTAMDNLGENPDPKDVARALSLQVINFAV
DKTDIPAENQAVLDRAVEVMKQVPDMQLLILGHTDSDGDDAYNKDLSQRRAEAVKAYLVSKGADAAKLMTKGMGETDPIA
TNETENGKFRNRRIEFTVYDESVAGMDTPITVTPSDSADIKAPTAEATTEPQADTAQ

Sequences:

>Translated_537_residues
MDIIGHLARTVTPAVLADNHNPQNESLLKQFYALFIAKLADQESFTRVGSQEIHRDDLGLFDRLWTDEGQKNHIAEELAA
HNNVDTISVKGLIASAAPLAFNEIKSLAGSVPIPQFLRDNLESYRNHIPTWATSVLPAGLLGLGASAAGAHAAHATTTNT
TATPAGHRISDTTSTEPLVREEKESGGFLKALLPIIGLIILAALAWALLKGCQKDPAPVATPEQTVQQPAEPAVTGNTAL
APAVLSLATGEGNELFACRINAGNEELSNTVMTAVKDVFGTGGDNCRADIDDGFATDMPAAPHLAAILPLIKNTPNANVI
IEGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDFDAEVKQSIADATTAMDNLGENPDPKDVARALSLQVINFAV
DKTDIPAENQAVLDRAVEVMKQVPDMQLLILGHTDSDGDDAYNKDLSQRRAEAVKAYLVSKGADAAKLMTKGMGETDPIA
TNETENGKFRNRRIEFTVYDESVAGMDTPITVTPSDSADIKAPTAEATTEPQADTAQ
>Mature_537_residues
MDIIGHLARTVTPAVLADNHNPQNESLLKQFYALFIAKLADQESFTRVGSQEIHRDDLGLFDRLWTDEGQKNHIAEELAA
HNNVDTISVKGLIASAAPLAFNEIKSLAGSVPIPQFLRDNLESYRNHIPTWATSVLPAGLLGLGASAAGAHAAHATTTNT
TATPAGHRISDTTSTEPLVREEKESGGFLKALLPIIGLIILAALAWALLKGCQKDPAPVATPEQTVQQPAEPAVTGNTAL
APAVLSLATGEGNELFACRINAGNEELSNTVMTAVKDVFGTGGDNCRADIDDGFATDMPAAPHLAAILPLIKNTPNANVI
IEGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDFDAEVKQSIADATTAMDNLGENPDPKDVARALSLQVINFAV
DKTDIPAENQAVLDRAVEVMKQVPDMQLLILGHTDSDGDDAYNKDLSQRRAEAVKAYLVSKGADAAKLMTKGMGETDPIA
TNETENGKFRNRRIEFTVYDESVAGMDTPITVTPSDSADIKAPTAEATTEPQADTAQ

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=112, Percent_Identity=38.3928571428571, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI48994946, Length=80, Percent_Identity=42.5, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 56857; Mature: 56857

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIIGHLARTVTPAVLADNHNPQNESLLKQFYALFIAKLADQESFTRVGSQEIHRDDLGL
CCHHHHHHHHHCHHHEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHH
FDRLWTDEGQKNHIAEELAAHNNVDTISVKGLIASAAPLAFNEIKSLAGSVPIPQFLRDN
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHHHHHHHHCCCCCHHHHHHH
LESYRNHIPTWATSVLPAGLLGLGASAAGAHAAHATTTNTTATPAGHRISDTTSTEPLVR
HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EEKESGGFLKALLPIIGLIILAALAWALLKGCQKDPAPVATPEQTVQQPAEPAVTGNTAL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHH
APAVLSLATGEGNELFACRINAGNEELSNTVMTAVKDVFGTGGDNCRADIDDGFATDMPA
HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC
APHLAAILPLIKNTPNANVIIEGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDF
CHHHHHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
DAEVKQSIADATTAMDNLGENPDPKDVARALSLQVINFAVDKTDIPAENQAVLDRAVEVM
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH
KQVPDMQLLILGHTDSDGDDAYNKDLSQRRAEAVKAYLVSKGADAAKLMTKGMGETDPIA
HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
TNETENGKFRNRRIEFTVYDESVAGMDTPITVTPSDSADIKAPTAEATTEPQADTAQ
CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDIIGHLARTVTPAVLADNHNPQNESLLKQFYALFIAKLADQESFTRVGSQEIHRDDLGL
CCHHHHHHHHHCHHHEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHH
FDRLWTDEGQKNHIAEELAAHNNVDTISVKGLIASAAPLAFNEIKSLAGSVPIPQFLRDN
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHHHHHHHHCCCCCHHHHHHH
LESYRNHIPTWATSVLPAGLLGLGASAAGAHAAHATTTNTTATPAGHRISDTTSTEPLVR
HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
EEKESGGFLKALLPIIGLIILAALAWALLKGCQKDPAPVATPEQTVQQPAEPAVTGNTAL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCHH
APAVLSLATGEGNELFACRINAGNEELSNTVMTAVKDVFGTGGDNCRADIDDGFATDMPA
HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC
APHLAAILPLIKNTPNANVIIEGNDVRIDAPDQAQLDKLVADIKAAAPELNVVATGPVDF
CHHHHHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
DAEVKQSIADATTAMDNLGENPDPKDVARALSLQVINFAVDKTDIPAENQAVLDRAVEVM
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH
KQVPDMQLLILGHTDSDGDDAYNKDLSQRRAEAVKAYLVSKGADAAKLMTKGMGETDPIA
HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
TNETENGKFRNRRIEFTVYDESVAGMDTPITVTPSDSADIKAPTAEATTEPQADTAQ
CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]