Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 148652017

GI number: 148652017

Start: 238140

End: 238670

Strand: Direct

Name: rimM

Synonym: PsycPRwf_0201

Alternate gene names: 148652017

Gene position: 238140-238670 (Clockwise)

Preceding gene: 148652016

Following gene: 148652018

Centisome position: 7.99

GC content: 45.95

Gene sequence:

>531_bases
ATGACCAAACCAAACGCTGACAGTCTTATGAAAATAGGACAACTAAAAAAACCATACGGCATTAAAGGCTGGTTATGGGT
TTTTAGTGAAACTGAGGAACGAGAAGCTATTTTTAGTTATTCGCCTTGGTGGATGAAAACGGCTACAGGCTTTAAACCCC
TGACCGTGACTCAGTGGCGCCGACAAGGCACAGGTATTGTGGCTCAATTTGAGCAAGTCCCTGATCGCAATGTCGCCGAA
ACGATGAACGGGGTTAGTATTTGGATTGATAAAGACAGCTTACCTAGCACTGAAGAGGACGAGTACTACTGGTCTGATTT
GGTGGGCTTAAGTGTCATTAATAAGCAAGATGAGTGCCTAGGCACGGTCAAAGAGCTGTTCGAAACTGGCGCACACCCGA
TTATGAAGGTAGTGCCGAGTCAAGACAGTATCGATGATGAGCCGCGCATGATTCCTTGGCACAAACAAACTGTCGATGTG
GTTGATTTGGCTGCCGGACGGATGGTTGTAGATTGGGAACGTGATTTTTAA

Upstream 100 bases:

>100_bases
CAACTGCTTAAGACATCATTTGCCTTGCAATGGGAGTGTATCTCATTGCAACCAAGTTTTGAGTAATTGTTTTTTTATTA
ATTGTGGCTGAGCAAGTCTT

Downstream 100 bases:

>100_bases
GCCCATAATTTAGATTAAGGCTTAACAATGATTCCTAGTTATTCAACGATTGTCTGTATTTTGACGCATTAATAAGATGG
AGGTGACCTAATGTATTTCG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWRRQGTGIVAQFEQVPDRNVAE
TMNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVINKQDECLGTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDV
VDLAAGRMVVDWERDF

Sequences:

>Translated_176_residues
MTKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWRRQGTGIVAQFEQVPDRNVAE
TMNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVINKQDECLGTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDV
VDLAAGRMVVDWERDF
>Mature_175_residues
TKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWRRQGTGIVAQFEQVPDRNVAET
MNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVINKQDECLGTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVV
DLAAGRMVVDWERDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=167, Percent_Identity=32.3353293413174, Blast_Score=113, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PSYWF (A5WBW9)

Other databases:

- EMBL:   CP000713
- RefSeq:   YP_001279110.1
- ProteinModelPortal:   A5WBW9
- SMR:   A5WBW9
- STRING:   A5WBW9
- GeneID:   5204785
- GenomeReviews:   CP000713_GR
- KEGG:   prw:PsycPRwf_0201
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   CLSK839561
- BioCyc:   PSP56811:PSYCPRWF_0201-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20245; Mature: 20114

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWR
CCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEECCCCCCCCHHHHHH
RQGTGIVAQFEQVPDRNVAETMNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVINKQDECL
HCCCCEEEHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
GTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVVDLAAGRMVVDWERDF
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
TKPNADSLMKIGQLKKPYGIKGWLWVFSETEEREAIFSYSPWWMKTATGFKPLTVTQWR
CCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEECCCCCCCCHHHHHH
RQGTGIVAQFEQVPDRNVAETMNGVSIWIDKDSLPSTEEDEYYWSDLVGLSVINKQDECL
HCCCCEEEHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
GTVKELFETGAHPIMKVVPSQDSIDDEPRMIPWHKQTVDVVDLAAGRMVVDWERDF
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA