Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
---|---|
Accession | NC_009524 |
Length | 2,978,976 |
Click here to switch to the map view.
The map label for this gene is rstB [H]
Identifier: 148652014
GI number: 148652014
Start: 234457
End: 236148
Strand: Direct
Name: rstB [H]
Synonym: PsycPRwf_0198
Alternate gene names: 148652014
Gene position: 234457-236148 (Clockwise)
Preceding gene: 148652013
Following gene: 148652016
Centisome position: 7.87
GC content: 46.51
Gene sequence:
>1692_bases ATGCCAATATTCTCATCCTTAAAACATAGTATTTTTCTGCGCATCTATGCCGGCTTATTATTGGTTTGTCTTTTTGTTGC CTTATTTGCCCAGCTGTTGGTGGACACTATCAATAACGAGCGCATTCAAACTTATAGAGAAAATGTGGCCACAGGCGCTT TATATTTGGTCAGCTCGGGTCTAAAGCAGCAAGCTTCTGAGACCCAGCGTGAATATTGGCTTAATGACATCAGTCAATTA TTTGGTAATAATTTTAGTATTCAGCCAGAGTCAAGTATCGACTTTAAGGCCAGTGAGCTCAAGCGTTTAGAGCAACAAAA AACAGTGGTACGTTATGTCGCTCAGCCGGCCTATGCCGACATTTTTCATCCTATCGAGGGTGAAGATAATGTCATTACCG TGCGTATTAGCAAAGTCACTGAGCAACAAGTGCGTGCCATGGCAGTACTGCTTTTAAATGATTTGTCCTACTTTCCTGAC CTTGAAAGCAAGCGTCAGCGTCTTAGTGAAATTTCAGAAAAATTCGCGTTTCCACTTAGCATTGAAAATGTTGATAAGCT TGAACTAGATGATGATCAACTGCGCCGCCTAGACCGTGATGAAGTGGTCATACTGTTTCGTGACAGTACCCGCTCTGATG ATTCCTCTATTAAGGTTATAGCGCCCTCTGAGCTTGAGAATATGGCGTTGGTTATTGGGCCGGTTAGTCTGTTTAAGTGG TTCCCCTTTAATCTGATTATCAGTGTGGTGCTTATCAGCATGTTCCTTATTAGTTTGGGAGTTTATGCACTGATTTTCCC ACTTGAGCGCAAATTGCAACTGATTCAGTCCGGTGTTAATGAGGTCGGCGATGGTAATTTAGATACCCGCGTGCAGGTGG TGGGTCAAGATGAGATTGCCCGATTGGCCGCCACCTTCAACGCCATGACTGAGCACATCAAGCGCCTTATTGAGTCACAG CGGGAGCTAACCCGAGCGGTGTCACATGAGCTGCGCACCCCTGTGGCACGTATTCGCTTTGCGGTAGATATGTTGGCAGA TACTGAAGATCAAGAATCTCGAGAGATGCAGCGCGACTATATCGATGAAGATATTGAGTCGTTAAATGGTCTTATTGATG AGATTTTAACTTACGCTAAGTTAGAAGAAGGCTCGCCTAAGCTAGACCTTGAGCCGGTGAGCCTAAAAGAGCTGGTCGAT CAGATTGTGCGTGAGACCAATGCGTTAGGTAAGCCTATTGAGATAGTGGGTATAGCACCGACAGCCAAGGTGACTGCGGT GGCAGACAGACGCTACCTACACCGTGTGGTGCAGAACTTGGCGGGTAATGCCTTGCGATATGCTGAGTCGAAGATTGTTA TTAGTGCCGGCGTACGTAAAGGCGAGGCTTTTGTGTCGGTAGAAGATGATGGCCACGGTATTCCAGAAGAAGATCGCGAT AAGGTATTCGTGCCTTTTGCGCGCTTAGATGACAGTCGCACGCGCGCTTCAGGGGGCTATGGCCTCGGGCTATCTATCGT GTCACGTATTGCGTTTTGGTTTAATGGCACCATGTCTGTGGATGAAAGTCCGAAATTGGGCGGCGCTCGCTTTACCATGA ATTGGCCGATTAAGCCGTTAACCCAGACCATTTCAGCCGATCAATTAACGCAAGAAAAAGGCGCTCGTAAACTGATAGAC AGCGACAGCTAA
Upstream 100 bases:
>100_bases ACGGGTAGCGTTAGTAGACACTGGCAGCAGCTTGATCATCGGTAGGTTAAAAATCCAAATTAGGGTAAACTAGGATAAAA TTAATTTTATTAGATGTCAT
Downstream 100 bases:
>100_bases TCCATTAGCTGTCCTATTGTCTGGCCTTACTCATACTGGTCTTGCTCATACGGACCCTATTCATGATAGGCTTCTACGTC ATCCTCATCGTTAGGCTCCC
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MPIFSSLKHSIFLRIYAGLLLVCLFVALFAQLLVDTINNERIQTYRENVATGALYLVSSGLKQQASETQREYWLNDISQL FGNNFSIQPESSIDFKASELKRLEQQKTVVRYVAQPAYADIFHPIEGEDNVITVRISKVTEQQVRAMAVLLLNDLSYFPD LESKRQRLSEISEKFAFPLSIENVDKLELDDDQLRRLDRDEVVILFRDSTRSDDSSIKVIAPSELENMALVIGPVSLFKW FPFNLIISVVLISMFLISLGVYALIFPLERKLQLIQSGVNEVGDGNLDTRVQVVGQDEIARLAATFNAMTEHIKRLIESQ RELTRAVSHELRTPVARIRFAVDMLADTEDQESREMQRDYIDEDIESLNGLIDEILTYAKLEEGSPKLDLEPVSLKELVD QIVRETNALGKPIEIVGIAPTAKVTAVADRRYLHRVVQNLAGNALRYAESKIVISAGVRKGEAFVSVEDDGHGIPEEDRD KVFVPFARLDDSRTRASGGYGLGLSIVSRIAFWFNGTMSVDESPKLGGARFTMNWPIKPLTQTISADQLTQEKGARKLID SDS
Sequences:
>Translated_563_residues MPIFSSLKHSIFLRIYAGLLLVCLFVALFAQLLVDTINNERIQTYRENVATGALYLVSSGLKQQASETQREYWLNDISQL FGNNFSIQPESSIDFKASELKRLEQQKTVVRYVAQPAYADIFHPIEGEDNVITVRISKVTEQQVRAMAVLLLNDLSYFPD LESKRQRLSEISEKFAFPLSIENVDKLELDDDQLRRLDRDEVVILFRDSTRSDDSSIKVIAPSELENMALVIGPVSLFKW FPFNLIISVVLISMFLISLGVYALIFPLERKLQLIQSGVNEVGDGNLDTRVQVVGQDEIARLAATFNAMTEHIKRLIESQ RELTRAVSHELRTPVARIRFAVDMLADTEDQESREMQRDYIDEDIESLNGLIDEILTYAKLEEGSPKLDLEPVSLKELVD QIVRETNALGKPIEIVGIAPTAKVTAVADRRYLHRVVQNLAGNALRYAESKIVISAGVRKGEAFVSVEDDGHGIPEEDRD KVFVPFARLDDSRTRASGGYGLGLSIVSRIAFWFNGTMSVDESPKLGGARFTMNWPIKPLTQTISADQLTQEKGARKLID SDS >Mature_562_residues PIFSSLKHSIFLRIYAGLLLVCLFVALFAQLLVDTINNERIQTYRENVATGALYLVSSGLKQQASETQREYWLNDISQLF GNNFSIQPESSIDFKASELKRLEQQKTVVRYVAQPAYADIFHPIEGEDNVITVRISKVTEQQVRAMAVLLLNDLSYFPDL ESKRQRLSEISEKFAFPLSIENVDKLELDDDQLRRLDRDEVVILFRDSTRSDDSSIKVIAPSELENMALVIGPVSLFKWF PFNLIISVVLISMFLISLGVYALIFPLERKLQLIQSGVNEVGDGNLDTRVQVVGQDEIARLAATFNAMTEHIKRLIESQR ELTRAVSHELRTPVARIRFAVDMLADTEDQESREMQRDYIDEDIESLNGLIDEILTYAKLEEGSPKLDLEPVSLKELVDQ IVRETNALGKPIEIVGIAPTAKVTAVADRRYLHRVVQNLAGNALRYAESKIVISAGVRKGEAFVSVEDDGHGIPEEDRDK VFVPFARLDDSRTRASGGYGLGLSIVSRIAFWFNGTMSVDESPKLGGARFTMNWPIKPLTQTISADQLTQEKGARKLIDS DS
Specific function: Member of the two-component regulatory system rstB/rstA. RstB functions as a membrane-associated protein kinase that phosphorylates rstA (Potential) [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1787894, Length=375, Percent_Identity=33.6, Blast_Score=198, Evalue=6e-52, Organism=Escherichia coli, GI1790346, Length=268, Percent_Identity=30.9701492537313, Blast_Score=129, Evalue=7e-31, Organism=Escherichia coli, GI1789808, Length=285, Percent_Identity=29.4736842105263, Blast_Score=122, Evalue=8e-29, Organism=Escherichia coli, GI1788393, Length=281, Percent_Identity=29.1814946619217, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI87081816, Length=288, Percent_Identity=28.8194444444444, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI87082128, Length=293, Percent_Identity=27.6450511945392, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1789149, Length=239, Percent_Identity=28.8702928870293, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI145693157, Length=268, Percent_Identity=26.4925373134328, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1786783, Length=300, Percent_Identity=26, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1790551, Length=295, Percent_Identity=27.1186440677966, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1786600, Length=251, Percent_Identity=26.2948207171315, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788549, Length=247, Percent_Identity=27.9352226720648, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1788713, Length=267, Percent_Identity=25.0936329588015, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI48994928, Length=216, Percent_Identity=26.3888888888889, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1786912, Length=242, Percent_Identity=28.9256198347107, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788279, Length=305, Percent_Identity=25.5737704918033, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790861, Length=232, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 63330; Mature: 63199
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIFSSLKHSIFLRIYAGLLLVCLFVALFAQLLVDTINNERIQTYRENVATGALYLVSSG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LKQQASETQREYWLNDISQLFGNNFSIQPESSIDFKASELKRLEQQKTVVRYVAQPAYAD HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH IFHPIEGEDNVITVRISKVTEQQVRAMAVLLLNDLSYFPDLESKRQRLSEISEKFAFPLS HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC IENVDKLELDDDQLRRLDRDEVVILFRDSTRSDDSSIKVIAPSELENMALVIGPVSLFKW CCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHH FPFNLIISVVLISMFLISLGVYALIFPLERKLQLIQSGVNEVGDGNLDTRVQVVGQDEIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHH RLAATFNAMTEHIKRLIESQRELTRAVSHELRTPVARIRFAVDMLADTEDQESREMQRDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHH IDEDIESLNGLIDEILTYAKLEEGSPKLDLEPVSLKELVDQIVRETNALGKPIEIVGIAP HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC TAKVTAVADRRYLHRVVQNLAGNALRYAESKIVISAGVRKGEAFVSVEDDGHGIPEEDRD CCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCCC KVFVPFARLDDSRTRASGGYGLGLSIVSRIAFWFNGTMSVDESPKLGGARFTMNWPIKPL CEEEEHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHH TQTISADQLTQEKGARKLIDSDS HHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PIFSSLKHSIFLRIYAGLLLVCLFVALFAQLLVDTINNERIQTYRENVATGALYLVSSG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LKQQASETQREYWLNDISQLFGNNFSIQPESSIDFKASELKRLEQQKTVVRYVAQPAYAD HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH IFHPIEGEDNVITVRISKVTEQQVRAMAVLLLNDLSYFPDLESKRQRLSEISEKFAFPLS HCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC IENVDKLELDDDQLRRLDRDEVVILFRDSTRSDDSSIKVIAPSELENMALVIGPVSLFKW CCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHH FPFNLIISVVLISMFLISLGVYALIFPLERKLQLIQSGVNEVGDGNLDTRVQVVGQDEIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHH RLAATFNAMTEHIKRLIESQRELTRAVSHELRTPVARIRFAVDMLADTEDQESREMQRDY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHH IDEDIESLNGLIDEILTYAKLEEGSPKLDLEPVSLKELVDQIVRETNALGKPIEIVGIAP HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC TAKVTAVADRRYLHRVVQNLAGNALRYAESKIVISAGVRKGEAFVSVEDDGHGIPEEDRD CCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCCC KVFVPFARLDDSRTRASGGYGLGLSIVSRIAFWFNGTMSVDESPKLGGARFTMNWPIKPL CEEEEHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHH TQTISADQLTQEKGARKLIDSDS HHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 2646639; 1925016; 1495392 [H]