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The map label for this gene is ydcM [C]

Identifier: 148652013

GI number: 148652013

Start: 232943

End: 234049

Strand: Direct

Name: ydcM [C]

Synonym: PsycPRwf_0197

Alternate gene names: 148652013

Gene position: 232943-234049 (Clockwise)

Preceding gene: 148652012

Following gene: 148652014

Centisome position: 7.82

GC content: 41.73

Gene sequence:

>1107_bases
ATGAAAACACTCAAGCTACGCATCAAAGACAAACATGCAAACCAGCTAAACAAACTAGCTGGGAGTGTTAACTATGCGTG
GAACTATGTTAATGCGTTAAGCTTTGTGCATTTAAGACGCACAGGTAAGTACTTTTCGGCCTATGATTTAAGCCAATACA
CCAAAGGCAGTGGAGAGTATTTAGGCTTGCACTCGCAAACTTTGCAAGCCATCAACGAAACTCATGCCAAATCTCGTAAG
CAGTTTAAAAAAGCCAAACTTAATTGGCGAACCAACCGACCCGATGCCAAACGCAAAAGCCTAGGCTGGATACCCTTTAA
AAAATCAGCCATCAAGTACCTAAATACAAGGCAAAGCGGTAAAAAAGCACTTAAATCAACCATACAGCTATCGCTCTGTA
AAGGTCAAAAGCTTATCATAGACGTATTTGATAGCTATAATCTAAGCCTATATCAAATCAACACGCTTGAGATAGTGCAA
GACAGCCGTCATCGTTGGTATGCCTGTATTACCGTCAAAGATTTTCCTAGACAAGCAAGTTGCAAAGGCAGCGTTGGTAT
TGACTTAGGCTTAAAGCAGTCTGCTACCACCTCAAACGGTGACAAGCTAACTATTAAGCAGACTCAAAAATGGGCGAATA
AATTAGCAGTCGCCCAGCGTGCAAACAATAAAAGCCGGGTAAAGGCAATACACGCCAAAATTAAAAACTCAAGATTAGAT
GCCATACACAAATTCACCACCCAATTAGTTAAGGATAATGCCTTAATTGTGGTTGGTGATGTTAAATCACGCTCATTCAC
TAATTCGATGACCAACCTAGCTAAATCAACATACGATGCAGGATGGTTTGAACTCAAAAGACAACTGGAATATAAATGCA
AGTATGCAGGTTGTCAGCTTGAGATGGTGAATGAGAGTTACACTACCCAAACCTGTTCGCACTGCCTTAAAATAAGTGAT
AGTAGTCCAAAAGGTAGAGCAGGTCTTGGAATAAGAGGATGGAGGTGTGCTGAGTGTGGCACATGGCATGATAGAGATAT
CAATGCTGCTAAGAACATCCTTGCGGTCGGGCTTGACCGTCTAGTTGTAGGAATCCCCTCGGTTTAG

Upstream 100 bases:

>100_bases
AAAGCCACTCACTTCAGTGGGTGGATATAAGGCGACACACACTGTCGTGATTAGTACTTAAAGTATTGCAAGTTAAAATT
AACCTCGCCATACTAACCCT

Downstream 100 bases:

>100_bases
CGAGGGGAGGAAGTCAACAAAAAGCCGGCTATAATAGCTGGCTTTTTTGTGTTTGGCTTTTGAGTGGTCTTCAGCATAGC
GGTTGTGTTCGACTGGTTTT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFVHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQSGKKALKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRHRWYACITVKDFPRQASCKGSVGIDLGLKQSATTSNGDKLTIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLVVGIPSV

Sequences:

>Translated_368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFVHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQSGKKALKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRHRWYACITVKDFPRQASCKGSVGIDLGLKQSATTSNGDKLTIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLVVGIPSV
>Mature_368_residues
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFVHLRRTGKYFSAYDLSQYTKGSGEYLGLHSQTLQAINETHAKSRK
QFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQSGKKALKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQ
DSRHRWYACITVKDFPRQASCKGSVGIDLGLKQSATTSNGDKLTIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQLEMVNESYTTQTCSHCLKISD
SSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDRLVVGIPSV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=236, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41531; Mature: 41531

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFVHLRRTGKYFSAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCCCCE
LGLHSQTLQAINETHAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQSG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHH
KKALKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQDSRHRWYACITVKDFPRQAS
HHHHHHHHEEEECCCCEEEEEEECCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCCC
CKGSVGIDLGLKQSATTSNGDKLTIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
CCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
EMVNESYTTQTCSHCLKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LVVGIPSV
HHCCCCCC
>Mature Secondary Structure
MKTLKLRIKDKHANQLNKLAGSVNYAWNYVNALSFVHLRRTGKYFSAYDLSQYTKGSGEY
CCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCCCCE
LGLHSQTLQAINETHAKSRKQFKKAKLNWRTNRPDAKRKSLGWIPFKKSAIKYLNTRQSG
ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCHHH
KKALKSTIQLSLCKGQKLIIDVFDSYNLSLYQINTLEIVQDSRHRWYACITVKDFPRQAS
HHHHHHHHEEEECCCCEEEEEEECCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCCC
CKGSVGIDLGLKQSATTSNGDKLTIKQTQKWANKLAVAQRANNKSRVKAIHAKIKNSRLD
CCCCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHH
AIHKFTTQLVKDNALIVVGDVKSRSFTNSMTNLAKSTYDAGWFELKRQLEYKCKYAGCQL
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
EMVNESYTTQTCSHCLKISDSSPKGRAGLGIRGWRCAECGTWHDRDINAAKNILAVGLDR
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
LVVGIPSV
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]