Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
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Accession | NC_009524 |
Length | 2,978,976 |
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The map label for this gene is 148651963
Identifier: 148651963
GI number: 148651963
Start: 175039
End: 175371
Strand: Direct
Name: 148651963
Synonym: PsycPRwf_0146
Alternate gene names: NA
Gene position: 175039-175371 (Clockwise)
Preceding gene: 148651955
Following gene: 148651964
Centisome position: 5.88
GC content: 45.35
Gene sequence:
>333_bases ATGCCGACGACTTATGACCAGGTTTCTGTCGTAAAGAATGCAACCATCTCTTATGATGGACGCTGTAGTAGCCACACGGT ATTATTTGAAGATGGCAGCAAAAAAATGCTGGGCATCATACTACCTTGTGATGAGCATGTCCGTGAGTATGAATTTGCCA CCCACACCTCAGAGAGAATGGAGATTACCTCAGGAGAGTGTGAAGTAAAAATCACCGGAGAGGATGAGTTTACTTATTAT CGCGCTGGCCAAGCTTTTGTTGTCGCAGGGGACAGCAGCTTTGCGCTACGTACTGAACAAATTGTGCAGTATATTTGTCA CCTAGAAGGGTAG
Upstream 100 bases:
>100_bases AACAAAAAATAGCATCAACAAGAGTAGGGCTGTAAGTTTAGCGATATCTGATTTTTAGCCCATGGTTATCATAAAGTAGA TTAAGATTAAGGAAGTCATC
Downstream 100 bases:
>100_bases GACAAGCGGCTTACCACCCACTTATTGGTATTTGTTTTAAGCATCCTAGGCAGCCACTTAGGGTGCTTTTGTGTCTTCTG GGCTGTTATTTAAGCCACAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MPTTYDQVSVVKNATISYDGRCSSHTVLFEDGSKKMLGIILPCDEHVREYEFATHTSERMEITSGECEVKITGEDEFTYY RAGQAFVVAGDSSFALRTEQIVQYICHLEG
Sequences:
>Translated_110_residues MPTTYDQVSVVKNATISYDGRCSSHTVLFEDGSKKMLGIILPCDEHVREYEFATHTSERMEITSGECEVKITGEDEFTYY RAGQAFVVAGDSSFALRTEQIVQYICHLEG >Mature_109_residues PTTYDQVSVVKNATISYDGRCSSHTVLFEDGSKKMLGIILPCDEHVREYEFATHTSERMEITSGECEVKITGEDEFTYYR AGQAFVVAGDSSFALRTEQIVQYICHLEG
Specific function: Unknown
COG id: COG3123
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0345 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009664 - InterPro: IPR014710 [H]
Pfam domain/function: PF06865 DUF1255 [H]
EC number: NA
Molecular weight: Translated: 12370; Mature: 12239
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTTYDQVSVVKNATISYDGRCSSHTVLFEDGSKKMLGIILPCDEHVREYEFATHTSERM CCCCCCCEEEEECCEEEECCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCEE EITSGECEVKITGEDEFTYYRAGQAFVVAGDSSFALRTEQIVQYICHLEG EEECCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEHHHHHHHHHHCCC >Mature Secondary Structure PTTYDQVSVVKNATISYDGRCSSHTVLFEDGSKKMLGIILPCDEHVREYEFATHTSERM CCCCCCEEEEECCEEEECCCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCEE EITSGECEVKITGEDEFTYYRAGQAFVVAGDSSFALRTEQIVQYICHLEG EEECCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA