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The map label for this gene is ybaK [H]

Identifier: 148651930

GI number: 148651930

Start: 136158

End: 136625

Strand: Direct

Name: ybaK [H]

Synonym: PsycPRwf_0113

Alternate gene names: 148651930

Gene position: 136158-136625 (Clockwise)

Preceding gene: 148651929

Following gene: 148651931

Centisome position: 4.57

GC content: 51.71

Gene sequence:

>468_bases
ATGACCCCAGCTGTGAATTTAGCCAAAAAACTCAAACTCGATTATCAACTACATGAATACCAGCATGATCCCAGCGCTGA
GTCTTATGGACTAGAGGCCGCTGACAAGCTGGGTCTGCCACCTGAGCACGTGTTTAAGACCTTGGTGGTGGCCACTGAGA
GTGATAAATTGGCGGTGGCCATTTTGCCGGTAATTGCCACCCTCAATTTCAAAAAAATGGCCAAGGCTATGGGCTGCAAA
AAGGTGCAAATGGCCGACCCCAAAGTGGTCGAGCGCAGCAGCGGTTATGTGCTGGGCGGCGTCAGTCCCTTAGGACAAAA
AAAACGACTGCCAACAGTCATTCATGAGTCTGCCCAGCAGCTGACGACGATGCATGTCAGCGGCGGCAGACGTGGGCTGG
AGATTGAGTTACCGCCGGCGCAATTGGCGCAGGCACTGACGGCTAAATTTGCCGATATTATTGATTAA

Upstream 100 bases:

>100_bases
TCGAAGTTGTTAGACGCCCCACTTATCAGTGGGGCTTTTAGTTTTTGGTGTAATGCGTTACTCTAAAACCACTTCAATGA
TATTGTAGAGGGCAGTGCAT

Downstream 100 bases:

>100_bases
TACTTTAGATTTAAGTCACTTATGTCATTTTTTTGATTTCAACTTACATTATATAGAGTATCCTAATGCCACATGTTATT
GTTCAAGCCACCCCCAACGT

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTPAVNLAKKLKLDYQLHEYQHDPSAESYGLEAADKLGLPPEHVFKTLVVATESDKLAVAILPVIATLNFKKMAKAMGCK
KVQMADPKVVERSSGYVLGGVSPLGQKKRLPTVIHESAQQLTTMHVSGGRRGLEIELPPAQLAQALTAKFADIID

Sequences:

>Translated_155_residues
MTPAVNLAKKLKLDYQLHEYQHDPSAESYGLEAADKLGLPPEHVFKTLVVATESDKLAVAILPVIATLNFKKMAKAMGCK
KVQMADPKVVERSSGYVLGGVSPLGQKKRLPTVIHESAQQLTTMHVSGGRRGLEIELPPAQLAQALTAKFADIID
>Mature_154_residues
TPAVNLAKKLKLDYQLHEYQHDPSAESYGLEAADKLGLPPEHVFKTLVVATESDKLAVAILPVIATLNFKKMAKAMGCKK
VQMADPKVVERSSGYVLGGVSPLGQKKRLPTVIHESAQQLTTMHVSGGRRGLEIELPPAQLAQALTAKFADIID

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=57.4193548387097, Blast_Score=184, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16770; Mature: 16639

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAVNLAKKLKLDYQLHEYQHDPSAESYGLEAADKLGLPPEHVFKTLVVATESDKLAVA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHEECCCCCEEHH
ILPVIATLNFKKMAKAMGCKKVQMADPKVVERSSGYVLGGVSPLGQKKRLPTVIHESAQQ
HHHHHHHCCHHHHHHHHCCCCEECCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHHHH
LTTMHVSGGRRGLEIELPPAQLAQALTAKFADIID
HHHHEECCCCCCEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPAVNLAKKLKLDYQLHEYQHDPSAESYGLEAADKLGLPPEHVFKTLVVATESDKLAVA
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHEECCCCCEEHH
ILPVIATLNFKKMAKAMGCKKVQMADPKVVERSSGYVLGGVSPLGQKKRLPTVIHESAQQ
HHHHHHHCCHHHHHHHHCCCCEECCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHHHH
LTTMHVSGGRRGLEIELPPAQLAQALTAKFADIID
HHHHEECCCCCCEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]