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The map label for this gene is yggB [C]

Identifier: 148651919

GI number: 148651919

Start: 121869

End: 123482

Strand: Direct

Name: yggB [C]

Synonym: PsycPRwf_0102

Alternate gene names: 148651919

Gene position: 121869-123482 (Clockwise)

Preceding gene: 148651918

Following gene: 148651921

Centisome position: 4.09

GC content: 48.64

Gene sequence:

>1614_bases
ATGCTCCTTGTTAGTGCGTGGCTATGGTGCTTGCCGGCGCAAGCGCTAACTGAAGCAGAGCAGCAAGGTACTAACAGTGA
GGCCGCAAGCGTCAGTGCCGAGCCGGTGGCGAGTAATCAAGAGATTGAGCAGCAACCGGTGGACTCAGATAAGCCAGACA
TAGCTGAGACACCGGGCGCGGTCAATGTGCCTACCGCAGGCAATATAACCGACAAAGATACCGTGATTGCCACCAAGCCT
GATCAGGTCAATGATCAAGATATCAAGCAGCGCATTAGCGGTATCTACTCTGAGATTGAAGGATTAAAAGCGCTTAGCGT
TACGGTTAGCCAAGGTGTGGTCAGTATATCGGGTGAAGTGCCCAATGAAAAAAAGGCGCAGCAAGCCATTAGCTTAGCCA
ATAGGGTCAGCGATGTGGTGGCCGTCGAGGACCGCATTAGTCGTACGCTGGATGTGCAAGACAATGTCACGCCGGTAATT
AGTTCGCTAAACCAGCAAATCCGTGCTTTTATCCAGGCGTTACCGCTGCTGGTAGTGGCCATTTTAGTGTTTGCTGCGGT
GGTTTGGTTTGGGTCTTGGCTGGCACGGCGTGAGTCGTTATGGCAGCGCATCACTCCCAATCCCTTTATTGCCGAACTGC
TGGCACAAACGGTTAAGGTGCTGTTCTTTATTATTGCGCTGTTGCTCGGCTTAAGCCTGATGGGGGCTGAGGCCATCATT
GGTACCTTGCTCGGAGGTGCCGGTGTCATCGGTATTGCAGTGGGCTTTGCAGTAAAAGACACCATTGAAAACTATATTGC
CTCTTTGATGCTCAGTATCCGTCAGCCCTTTCAGGCGCGAGATTTGGTCAGTATTAATGGTCAGCAAGGCATTGTGGTAC
GTCTGACCAGTCGGGCCACCATTTTGATGACCTCAGATGGCAATCAATTGCGGTTGCCAAATTCAGAGGTGTTTAAAGGT
ACTATCTTAAACTACACCAAAAACCCCGAGCGCCGTTTTACCTTTCAGTTGGGCGTCGATGCTAATGATGACCCCTTAGC
AGCAATCAAGGTAGGCTTAGAGGCAGTTAACAGTCTGGATTTCGTCCTTGATAACCCAAAAGCTGTGTGCATTATTACTG
AAGTCGGTGACTCCAATATCATGCTCGAATTTCAAGTATGGGTCGATCAAACCGATACCGATATCATGAAAGCTCGTAGT
ATCGCTATTCGTGAAGCCAAGCATGCTCTTGAGGACCATGGCTTTAGCTTACCTGAACCGATTTATCGGTTGCGCTTTAA
CCAAGATGTAGAGCATGCCATCATGCAATTGCATAGCGCCTTATCCGGTGAATCAGCAGAGTCTACTGAATATGACAACA
GCTTTGTGGCAAATAACCCTAAGCTGATTGAAGCGCTGAGCAAACAAATAGCGGCACTCAATAATCAAGCCAAACCAGAT
ACCGCACAAAAAGAGCAAGCCAAGCAGCGCGCCAAGCAGATACTGGGTGATAAGGCGGTCAAAGAGATCTTTGATGCCAA
GCCTGATCCAAAATTGATGCAAAAAGTAGAAGAGGAAATCCAAGACCACAGCGGTGATAAAGACTTATTAGATGGCAATA
GTCCGCAAGAGTAA

Upstream 100 bases:

>100_bases
AATGCCCTTTTTTTTAAAGCCGTCTCATAGCCACCGCACCACTGAATCTGGCTTGCGCCTAAACCCCATCACTGCTGATA
GGGGCAGGCTAGGGGCTGTG

Downstream 100 bases:

>100_bases
GCCGTTGGCATTTGAATGTACAGTCAACACCAAAAAAAAGCTGAGCTCCCATATCGGGGCTCAGCTTTTTTTGGTATTCA
CACCTATAGGCTTTTAGCGC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MLLVSAWLWCLPAQALTEAEQQGTNSEAASVSAEPVASNQEIEQQPVDSDKPDIAETPGAVNVPTAGNITDKDTVIATKP
DQVNDQDIKQRISGIYSEIEGLKALSVTVSQGVVSISGEVPNEKKAQQAISLANRVSDVVAVEDRISRTLDVQDNVTPVI
SSLNQQIRAFIQALPLLVVAILVFAAVVWFGSWLARRESLWQRITPNPFIAELLAQTVKVLFFIIALLLGLSLMGAEAII
GTLLGGAGVIGIAVGFAVKDTIENYIASLMLSIRQPFQARDLVSINGQQGIVVRLTSRATILMTSDGNQLRLPNSEVFKG
TILNYTKNPERRFTFQLGVDANDDPLAAIKVGLEAVNSLDFVLDNPKAVCIITEVGDSNIMLEFQVWVDQTDTDIMKARS
IAIREAKHALEDHGFSLPEPIYRLRFNQDVEHAIMQLHSALSGESAESTEYDNSFVANNPKLIEALSKQIAALNNQAKPD
TAQKEQAKQRAKQILGDKAVKEIFDAKPDPKLMQKVEEEIQDHSGDKDLLDGNSPQE

Sequences:

>Translated_537_residues
MLLVSAWLWCLPAQALTEAEQQGTNSEAASVSAEPVASNQEIEQQPVDSDKPDIAETPGAVNVPTAGNITDKDTVIATKP
DQVNDQDIKQRISGIYSEIEGLKALSVTVSQGVVSISGEVPNEKKAQQAISLANRVSDVVAVEDRISRTLDVQDNVTPVI
SSLNQQIRAFIQALPLLVVAILVFAAVVWFGSWLARRESLWQRITPNPFIAELLAQTVKVLFFIIALLLGLSLMGAEAII
GTLLGGAGVIGIAVGFAVKDTIENYIASLMLSIRQPFQARDLVSINGQQGIVVRLTSRATILMTSDGNQLRLPNSEVFKG
TILNYTKNPERRFTFQLGVDANDDPLAAIKVGLEAVNSLDFVLDNPKAVCIITEVGDSNIMLEFQVWVDQTDTDIMKARS
IAIREAKHALEDHGFSLPEPIYRLRFNQDVEHAIMQLHSALSGESAESTEYDNSFVANNPKLIEALSKQIAALNNQAKPD
TAQKEQAKQRAKQILGDKAVKEIFDAKPDPKLMQKVEEEIQDHSGDKDLLDGNSPQE
>Mature_537_residues
MLLVSAWLWCLPAQALTEAEQQGTNSEAASVSAEPVASNQEIEQQPVDSDKPDIAETPGAVNVPTAGNITDKDTVIATKP
DQVNDQDIKQRISGIYSEIEGLKALSVTVSQGVVSISGEVPNEKKAQQAISLANRVSDVVAVEDRISRTLDVQDNVTPVI
SSLNQQIRAFIQALPLLVVAILVFAAVVWFGSWLARRESLWQRITPNPFIAELLAQTVKVLFFIIALLLGLSLMGAEAII
GTLLGGAGVIGIAVGFAVKDTIENYIASLMLSIRQPFQARDLVSINGQQGIVVRLTSRATILMTSDGNQLRLPNSEVFKG
TILNYTKNPERRFTFQLGVDANDDPLAAIKVGLEAVNSLDFVLDNPKAVCIITEVGDSNIMLEFQVWVDQTDTDIMKARS
IAIREAKHALEDHGFSLPEPIYRLRFNQDVEHAIMQLHSALSGESAESTEYDNSFVANNPKLIEALSKQIAALNNQAKPD
TAQKEQAKQRAKQILGDKAVKEIFDAKPDPKLMQKVEEEIQDHSGDKDLLDGNSPQE

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=220, Percent_Identity=25.9090909090909, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI2367355, Length=231, Percent_Identity=20.3463203463203, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 58517; Mature: 58517

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50914 BON ; PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVSAWLWCLPAQALTEAEQQGTNSEAASVSAEPVASNQEIEQQPVDSDKPDIAETPGA
CHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
VNVPTAGNITDKDTVIATKPDQVNDQDIKQRISGIYSEIEGLKALSVTVSQGVVSISGEV
EECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHEEEHHCCEEEECCCC
PNEKKAQQAISLANRVSDVVAVEDRISRTLDVQDNVTPVISSLNQQIRAFIQALPLLVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILVFAAVVWFGSWLARRESLWQRITPNPFIAELLAQTVKVLFFIIALLLGLSLMGAEAII
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLLGGAGVIGIAVGFAVKDTIENYIASLMLSIRQPFQARDLVSINGQQGIVVRLTSRAT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCEE
ILMTSDGNQLRLPNSEVFKGTILNYTKNPERRFTFQLGVDANDDPLAAIKVGLEAVNSLD
EEEECCCCEEECCCCHHHCCHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
FVLDNPKAVCIITEVGDSNIMLEFQVWVDQTDTDIMKARSIAIREAKHALEDHGFSLPEP
HEECCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
IYRLRFNQDVEHAIMQLHSALSGESAESTEYDNSFVANNPKLIEALSKQIAALNNQAKPD
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCC
TAQKEQAKQRAKQILGDKAVKEIFDAKPDPKLMQKVEEEIQDHSGDKDLLDGNSPQE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLVSAWLWCLPAQALTEAEQQGTNSEAASVSAEPVASNQEIEQQPVDSDKPDIAETPGA
CHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
VNVPTAGNITDKDTVIATKPDQVNDQDIKQRISGIYSEIEGLKALSVTVSQGVVSISGEV
EECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHEEEHHCCEEEECCCC
PNEKKAQQAISLANRVSDVVAVEDRISRTLDVQDNVTPVISSLNQQIRAFIQALPLLVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILVFAAVVWFGSWLARRESLWQRITPNPFIAELLAQTVKVLFFIIALLLGLSLMGAEAII
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLLGGAGVIGIAVGFAVKDTIENYIASLMLSIRQPFQARDLVSINGQQGIVVRLTSRAT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCEE
ILMTSDGNQLRLPNSEVFKGTILNYTKNPERRFTFQLGVDANDDPLAAIKVGLEAVNSLD
EEEECCCCEEECCCCHHHCCHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
FVLDNPKAVCIITEVGDSNIMLEFQVWVDQTDTDIMKARSIAIREAKHALEDHGFSLPEP
HEECCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
IYRLRFNQDVEHAIMQLHSALSGESAESTEYDNSFVANNPKLIEALSKQIAALNNQAKPD
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCC
TAQKEQAKQRAKQILGDKAVKEIFDAKPDPKLMQKVEEEIQDHSGDKDLLDGNSPQE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]