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The map label for this gene is recF [H]

Identifier: 148651821

GI number: 148651821

Start: 4455

End: 5834

Strand: Direct

Name: recF [H]

Synonym: PsycPRwf_0004

Alternate gene names: 148651821

Gene position: 4455-5834 (Clockwise)

Preceding gene: 148651820

Following gene: 148651822

Centisome position: 0.15

GC content: 45.51

Gene sequence:

>1380_bases
ATGCTGACGCAACTGAGCATTCATCAATTACGTAATTTGCATTCCGTTAATATTAAAGTCGGGCAGTGTAACGTGTTTGT
GGGTGCCAATGGCAGTGGTAAGACTTCTTTACTAGAGTCATTGTATCTGCTATCGCGGGGTAAAAGCTTTCGTCATCATC
AGCCCAAGCGATATATCTCACATCATGCTGCGCACGCCACTGTCCATGCCAAGTTTGCCAATGGCAGCAGTATGGCCATC
CAAAAGGCGCAAGATGCCAGCACCATTCTGCGCTTAGATCAGCAGACAGTATATGTACAAAGTGCCTTGGCTAAGCAGTT
GCCCACCTTGCTCATTGATCCCTCATCGATGGATGTGCTTGAAATAGGTAGCAGCAGTCGTCGTCAGTTATTAGACTGGA
TAACGTTTCACGTGAAACCTGGATTTCATGCACAGTGGTTGGCTTACCAACGTCTATTAAAGCAGCGCAATACTATTTTA
AGGCAGTCTGGGTATTTGTCCGATTATCAAAGACAAGAGTTGGCAGCTTGGGACAAGGGGCTGGCCAATCATGCCGCTTT
AATTACTCATTATCGCCATGAGGCATTTGAGGAGTGGCAGCCCTTATTCAATCAATTAATTGAGCAGTTGTTGCCAGATT
ACGCTCCTTTTATTCAGCTCAGGTTCTCTGCCGGATACAACACGGATCTGCCTTTAGATGAGTTATTGCAGCAGCGTCTG
GCGCAGGATTTTCAGACGGGTTATACCCGAGTTGGCTGTCATAGAGCAGATATACAGGTGCTTTGGCTTGAAGATGCACA
GGCGAGACAGACCGTACAGCAAGCTGCTGAAACATCGGGTATGGCGCAGACTGCTGCTCATTCCAATATTCATTCTCATG
CTGACATAAAGTTATCCACAGACCTTGTGGATAATATAGAGGATATGAATAACTGGGAAGATGAGACCGCTTATGCCTTG
ACAGGTAACGTGCGAGAGCAGGCTGCTAATGTATTATCACGTGGTGAGAAAAAACTGTTAATTACCGCACTTCGCTTGTC
TCAGCTACCTTTACTATCCACAAAACTATCCACAAAGTTATCGCTCACTGAGTCTGCCGCTGTGACAGACACTGTTATAG
GCTCTAATAGCGCCTCTGAAGACCAACCATACCCTTCGGCTTTAAGCGATGCCATATTACCTGTGGTCTTATTAGATGAT
ATCACTGCTGAGCTGGATGAAAGGGCGCTGAGTATCTTGCTTAAGACGCTCTCTGAGTTGTCATGCCAGATATTTATTAC
CAGTTTGGATGGCGATATTATGCCGCAAATTAAACAGTATTGGCCACAGGCGCAAAGGTTTCACGTGAAACAAGGGCATA
TACAAAAAATGACTGAGTAA

Upstream 100 bases:

>100_bases
TCGCAATGATTGCTGTCATAATGCTAACTATGGCTGGCTTAAAATAAGTCAGGCTATTTACGACTCTATCGATATCTATT
CATAGCTTGAAGGTTTTTTT

Downstream 100 bases:

>100_bases
AGGGTGCTTAACCCTACAGTTTACGGCAATTGACGCCTGTACAGTGCATGCTTTTATGACTAAAAAATGCTATAATAGTG
AATAAGTTTTATACTAAATT

Product: DNA replication and repair protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MLTQLSIHQLRNLHSVNIKVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYISHHAAHATVHAKFANGSSMAI
QKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSMDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTIL
RQSGYLSDYQRQELAAWDKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQQRL
AQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIKLSTDLVDNIEDMNNWEDETAYAL
TGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLSTKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDD
ITAELDERALSILLKTLSELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHIQKMTE

Sequences:

>Translated_459_residues
MLTQLSIHQLRNLHSVNIKVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYISHHAAHATVHAKFANGSSMAI
QKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSMDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTIL
RQSGYLSDYQRQELAAWDKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQQRL
AQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIKLSTDLVDNIEDMNNWEDETAYAL
TGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLSTKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDD
ITAELDERALSILLKTLSELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHIQKMTE
>Mature_459_residues
MLTQLSIHQLRNLHSVNIKVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYISHHAAHATVHAKFANGSSMAI
QKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSMDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTIL
RQSGYLSDYQRQELAAWDKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQQRL
AQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIKLSTDLVDNIEDMNNWEDETAYAL
TGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLSTKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDD
ITAELDERALSILLKTLSELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHIQKMTE

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=263, Percent_Identity=32.6996197718631, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 51549; Mature: 51549

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTQLSIHQLRNLHSVNIKVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS
CCCCCCHHHHCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
HHAAHATVHAKFANGSSMAIQKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSMDVL
HHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCE
EIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAAWDKG
ECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQQRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
AQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIKLST
HHHHHCCCCCCCCEECCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEH
DLVDNIEDMNNWEDETAYALTGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLSTKL
HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCHHEEHHHHHHHCCCHHHHHHHHHE
SLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDDITAELDERALSILLKTLSEL
EECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHIQKMTE
EEEEEEEECCCCHHHHHHHHCCHHHHEECCCCCHHHCCC
>Mature Secondary Structure
MLTQLSIHQLRNLHSVNIKVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS
CCCCCCHHHHCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
HHAAHATVHAKFANGSSMAIQKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSMDVL
HHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCE
EIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAAWDKG
ECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQQRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
AQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIKLST
HHHHHCCCCCCCCEECCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEH
DLVDNIEDMNNWEDETAYALTGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLSTKL
HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCHHEEHHHHHHHCCCHHHHHHHHHE
SLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDDITAELDERALSILLKTLSEL
EECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHIQKMTE
EEEEEEEECCCCHHHHHHHHCCHHHHEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA