Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550769
Identifier: 148550769
GI number: 148550769
Start: 233345
End: 233908
Strand: Direct
Name: 148550769
Synonym: Swit_5333
Alternate gene names: NA
Gene position: 233345-233908 (Clockwise)
Preceding gene: 148550768
Following gene: 148550774
Centisome position: 75.22
GC content: 63.48
Gene sequence:
>564_bases ATGGCCAGGAAGCAGGATACGGAACACCGTCGTCATCGCATAAAGACAGTGCGAACCGCTGTAGGTTACCAAGCGCGCGC CTTTCGCGGGTCCAATGCGGTCGGCGACACCATGTCCGGCCCTACCGAGGCGGCGGCGATCCTGGGTGTTCGCGATCTTT TGGATGCGCGCGCAGCGGAGCTTCGCGCCCGGCGCGGTCCGGGCGGTTTCCCCTGCGCGGAGGAAGTGCGCGAAGCCTTG GTGATGATCCGTATGAATAAGGCACAGGAAGCGATGCTGCAGGCCCATGTGGCGGCCCCCGACTTCACGCTCACCGCGAC CCAGCTGGCGCAGGCCGCAGGTTATGAGGACTATGCCGTCGCCAACCGGCAATATGGTCAGCTCGCGCACGATCTTGCCA TGGAAATGGACTGGCGCCCGGTCGAAGAAACGAACGGAGTCACGACCTGGACCTTTACGCTGGCAGATGACGCCGACAAG GATGCCCGCAAGCGCGGTGAAGACGTGCCGGGACCTTGGCGTTGGCGATTGCGTTCGGAGATCATCCAGGCGCTAGGCAG TTGA
Upstream 100 bases:
>100_bases CACGGACGAAGCCGGCACCTATGTCGATCACATTGGAGCTATCTCACCGTTGACCCATCAATCTCTGCGAACGCATTTCG GATATTGAGGAGGCAACGCC
Downstream 100 bases:
>100_bases TGCGCGCGAACGATCGCAGCACAGTGGCGCTCATTGGGATGTTATGATGAAAACTGCTCTCAGCAGGAAAGGTTGTGGTA CGGCCGCCGACCAAACGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MARKQDTEHRRHRIKTVRTAVGYQARAFRGSNAVGDTMSGPTEAAAILGVRDLLDARAAELRARRGPGGFPCAEEVREAL VMIRMNKAQEAMLQAHVAAPDFTLTATQLAQAAGYEDYAVANRQYGQLAHDLAMEMDWRPVEETNGVTTWTFTLADDADK DARKRGEDVPGPWRWRLRSEIIQALGS
Sequences:
>Translated_187_residues MARKQDTEHRRHRIKTVRTAVGYQARAFRGSNAVGDTMSGPTEAAAILGVRDLLDARAAELRARRGPGGFPCAEEVREAL VMIRMNKAQEAMLQAHVAAPDFTLTATQLAQAAGYEDYAVANRQYGQLAHDLAMEMDWRPVEETNGVTTWTFTLADDADK DARKRGEDVPGPWRWRLRSEIIQALGS >Mature_186_residues ARKQDTEHRRHRIKTVRTAVGYQARAFRGSNAVGDTMSGPTEAAAILGVRDLLDARAAELRARRGPGGFPCAEEVREALV MIRMNKAQEAMLQAHVAAPDFTLTATQLAQAAGYEDYAVANRQYGQLAHDLAMEMDWRPVEETNGVTTWTFTLADDADKD ARKRGEDVPGPWRWRLRSEIIQALGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20752; Mature: 20620
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKQDTEHRRHRIKTVRTAVGYQARAFRGSNAVGDTMSGPTEAAAILGVRDLLDARAAE CCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LRARRGPGGFPCAEEVREALVMIRMNKAQEAMLQAHVAAPDFTLTATQLAQAAGYEDYAV HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHH ANRQYGQLAHDLAMEMDWRPVEETNGVTTWTFTLADDADKDARKRGEDVPGPWRWRLRSE HCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHH IIQALGS HHHHHCC >Mature Secondary Structure ARKQDTEHRRHRIKTVRTAVGYQARAFRGSNAVGDTMSGPTEAAAILGVRDLLDARAAE CCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LRARRGPGGFPCAEEVREALVMIRMNKAQEAMLQAHVAAPDFTLTATQLAQAAGYEDYAV HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHH ANRQYGQLAHDLAMEMDWRPVEETNGVTTWTFTLADDADKDARKRGEDVPGPWRWRLRSE HCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHH IIQALGS HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA