Click here to switch to the map view.

The map label for this gene is 148550704

Identifier: 148550704

GI number: 148550704

Start: 163032

End: 163766

Strand: Direct

Name: 148550704

Synonym: Swit_5268

Alternate gene names: NA

Gene position: 163032-163766 (Clockwise)

Preceding gene: 148550703

Following gene: 148550705

Centisome position: 52.55

GC content: 69.39

Gene sequence:

>735_bases
ATGAGCGGCCGGTCTCCTGCACGGCGATGGGTCCGCGCCGCGCTGCTGGTCGCGCTGCTCGTCATCGCCGCGGGCGCGGG
ATATTGCCATTTTCTGGGCTATCCGGCCGGGCCGATCTACAGCCGGGTGCCGGCGAGCGCCTCGTCCGCAAGGCAAGACG
GCACGGTCGCCCTGTTTTTTTCCGGTGACCTGGGGTTCAACACCGGCATGGGGCCCAGGATCGCGAGGCACATCGCCGCA
GCCGGGATCCCGGTCCTGGGCGTCAATTCGCTCAGCGCCTTTGCCCGTCGCCGCTCGCCGCAGGAGACGCGGGCGCTCGT
GCGCCAGGCAATCGGCCGCGCCCTCGCCGAGCCAGGCACCCGCCGCCTTGTGGTGATCGGGCAGTCCTTCGGCGCCGATG
TCCTCCTGACGGGTTTGGCTGACCTGCTCCCCGCCGATCGGCAGCGTATCGTGCTTGCGGCCCTCATCGTTCCGCAGGAC
ACGCTGTCGTTCCGGGCGACGCCGGGCGGCGTCTTCAACTTCGGCAATGACGGTCCGGCTCTTCCCACCGCCCGGCGCTT
CGATTGGGCGCCCGCTCTCTGTATCCAGGGCGAGACCGAGCCGGAAAGCCTATGCCCCGTTTGGAGCGCGAGCGCGCGCA
ACGTGACACGGATCGCGCTGCCCGGCGGCCACTTCCTGAATGACGATGTCGGCAAGGTGTCGGCCGTAATCCTGCGGGCA
ATCGACGGCCACTGA

Upstream 100 bases:

>100_bases
AGAAATTCTCGCCTGTCTGGGAGCCGCGCTTCATCGCGGGACCGCAAGGCCCGGCGCTCGCCAGGGCGCTGTTCGACCTC
CAGGCGCTGATCGGCGGCAA

Downstream 100 bases:

>100_bases
CCTCATGCATGTGGTCAGGCTCAACGGCTGATAGGATTGCCTTCATCGTCGAGCCTGGAATCGCCACCGCGCAATCGCTG
AATCTTAGCCACTTTCCCCG

Product: type IV secretory pathway VirJ component-like protein

Products: NA

Alternate protein names: Virulence Factor Family Protein; Type IV Secretory Pathway VirJ Component-Like Protein; Type IV Secretion System VirJ-Like Protein; Acid Virulence Protein B; AcvB-Related Protein; Type IV Secretory Pathway VirJ Component; Type IV Secretory Pathway VirJ Component-Like; Acid lerance Protein; Type IV Secretory Pathway Virj Component-Related Protein; Virj-Like Protein

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSGRSPARRWVRAALLVALLVIAAGAGYCHFLGYPAGPIYSRVPASASSARQDGTVALFFSGDLGFNTGMGPRIARHIAA
AGIPVLGVNSLSAFARRRSPQETRALVRQAIGRALAEPGTRRLVVIGQSFGADVLLTGLADLLPADRQRIVLAALIVPQD
TLSFRATPGGVFNFGNDGPALPTARRFDWAPALCIQGETEPESLCPVWSASARNVTRIALPGGHFLNDDVGKVSAVILRA
IDGH

Sequences:

>Translated_244_residues
MSGRSPARRWVRAALLVALLVIAAGAGYCHFLGYPAGPIYSRVPASASSARQDGTVALFFSGDLGFNTGMGPRIARHIAA
AGIPVLGVNSLSAFARRRSPQETRALVRQAIGRALAEPGTRRLVVIGQSFGADVLLTGLADLLPADRQRIVLAALIVPQD
TLSFRATPGGVFNFGNDGPALPTARRFDWAPALCIQGETEPESLCPVWSASARNVTRIALPGGHFLNDDVGKVSAVILRA
IDGH
>Mature_243_residues
SGRSPARRWVRAALLVALLVIAAGAGYCHFLGYPAGPIYSRVPASASSARQDGTVALFFSGDLGFNTGMGPRIARHIAAA
GIPVLGVNSLSAFARRRSPQETRALVRQAIGRALAEPGTRRLVVIGQSFGADVLLTGLADLLPADRQRIVLAALIVPQDT
LSFRATPGGVFNFGNDGPALPTARRFDWAPALCIQGETEPESLCPVWSASARNVTRIALPGGHFLNDDVGKVSAVILRAI
DGH

Specific function: Unknown

COG id: COG3946

COG function: function code U; Type IV secretory pathway, VirJ component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25641; Mature: 25510

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRSPARRWVRAALLVALLVIAAGAGYCHFLGYPAGPIYSRVPASASSARQDGTVALFF
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEE
SGDLGFNTGMGPRIARHIAAAGIPVLGVNSLSAFARRRSPQETRALVRQAIGRALAEPGT
ECCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RRLVVIGQSFGADVLLTGLADLLPADRQRIVLAALIVPQDTLSFRATPGGVFNFGNDGPA
CEEEEEECCCCHHHHHHHHHHHCCCCCHHEEEEEEECCCCCCEEECCCCCEEECCCCCCC
LPTARRFDWAPALCIQGETEPESLCPVWSASARNVTRIALPGGHFLNDDVGKVSAVILRA
CCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
IDGH
HCCC
>Mature Secondary Structure 
SGRSPARRWVRAALLVALLVIAAGAGYCHFLGYPAGPIYSRVPASASSARQDGTVALFF
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEE
SGDLGFNTGMGPRIARHIAAAGIPVLGVNSLSAFARRRSPQETRALVRQAIGRALAEPGT
ECCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RRLVVIGQSFGADVLLTGLADLLPADRQRIVLAALIVPQDTLSFRATPGGVFNFGNDGPA
CEEEEEECCCCHHHHHHHHHHHCCCCCHHEEEEEEECCCCCCEEECCCCCEEECCCCCCC
LPTARRFDWAPALCIQGETEPESLCPVWSASARNVTRIALPGGHFLNDDVGKVSAVILRA
CCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
IDGH
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA