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The map label for this gene is ihfB [H]

Identifier: 148550652

GI number: 148550652

Start: 106506

End: 106910

Strand: Direct

Name: ihfB [H]

Synonym: Swit_5215

Alternate gene names: 148550652

Gene position: 106506-106910 (Clockwise)

Preceding gene: 148550651

Following gene: 148550657

Centisome position: 34.33

GC content: 64.69

Gene sequence:

>405_bases
ATGACTTACCTTGGATGCAGTGACAAACCAGTGAAGCAGGCTCCAGCCATGGTGCGATCTGAACTCGTGGCCCTCCTGGG
CAAGGAAAACCCGGAACTCTCCGCGCAGGAGATTGAAAAGATCGTCGATCTCTTCTTCGAGGCGGTCGTCGACCAGCTAG
CCGCTGGCGGGCGTGTCGAGCTGCGCGGGTTCGGTGCCTTTTTGACGCGGCTGCACGAGGCTCGCACCGGGCGAAATCCA
CGCAGCGGCTTGGCCGTGCCGGTCCCGGCCAAGCGATCGGTGCATTTCAAGCCAGGCAAGGCGATGCGGGAGCGGCTGAT
CGCCGCGGCGGCTGGCATGACCAAGGCAGCGCCCTCTTCCGCCGCTGCTTTCTCTACCGCGTCGGCCGAAGCGCGCGCTG
CCTGA

Upstream 100 bases:

>100_bases
CGGACCTTCAGATCGTGCCGCGGTGAGTTGCCAGCCCGACCAACCACACTCAAACTAAATCATTACGACACCAACATAAA
ATGTGGAGATAGGCGAGCGG

Downstream 100 bases:

>100_bases
AATCCCTCTGGAGCGCCGGGGCCCTGTGACGCCCTTCGGCGTGAAATCGCTGGCCTGTCAGCCGATTGCGCGATGTTCGG
GGTCCGCCAGGCGAAAGCAG

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTYLGCSDKPVKQAPAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHEARTGRNP
RSGLAVPVPAKRSVHFKPGKAMRERLIAAAAGMTKAAPSSAAAFSTASAEARAA

Sequences:

>Translated_134_residues
MTYLGCSDKPVKQAPAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHEARTGRNP
RSGLAVPVPAKRSVHFKPGKAMRERLIAAAAGMTKAAPSSAAAFSTASAEARAA
>Mature_133_residues
TYLGCSDKPVKQAPAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHEARTGRNPR
SGLAVPVPAKRSVHFKPGKAMRERLIAAAAGMTKAAPSSAAAFSTASAEARAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=89, Percent_Identity=40.4494382022472, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788005, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 14132; Mature: 14001

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYLGCSDKPVKQAPAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
LRGFGAFLTRLHEARTGRNPRSGLAVPVPAKRSVHFKPGKAMRERLIAAAAGMTKAAPSS
EHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
AAAFSTASAEARAA
HHHHHHCCCHHCCC
>Mature Secondary Structure 
TYLGCSDKPVKQAPAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
LRGFGAFLTRLHEARTGRNPRSGLAVPVPAKRSVHFKPGKAMRERLIAAAAGMTKAAPSS
EHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
AAAFSTASAEARAA
HHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA