Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
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Accession | NC_009507 |
Length | 310,228 |
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The map label for this gene is 148550644
Identifier: 148550644
GI number: 148550644
Start: 96094
End: 96870
Strand: Reverse
Name: 148550644
Synonym: Swit_5206
Alternate gene names: NA
Gene position: 96870-96094 (Counterclockwise)
Preceding gene: 148550647
Following gene: 148550642
Centisome position: 31.23
GC content: 66.54
Gene sequence:
>777_bases ATGGAGACCTCACGAAGCCAGCGATGGCGGGAACGCCGCGCCTTATGGGCGACGGACTCTCTCATCATCAATCCGAAGGC CTATTCGGTCGACATCATCGATCACGCCGTAGCGCGTACGTTCATCGCCGAGCATCATTATCTGCCGAGCTATCCGGCAG CCCAGGTCGCAGTCGGCCTCTTTGGACTCCGCGCGGTCCTGGCAGGCGTGGCCGTCTTCGCGGTTCCCGCGACCGACGCC GTCATCACCCGGCACACGGGCTTCACCGATCCGGCAAAGGGATGCGTTCTCGCACGCCTGATTCTTCTCGACCGGGTCCC GCAGAACGGGGAAAGCTTCTTTTGCGCACGGGCCTTCCGACTGCTTCGCCAGGCGCGGCCAGCGATCGAAGCCGTCGTTT CCTACAGCGACCCCGAATTCGGGCATACCGGCCGGGTTTACGCCGCTCTTTCCGGGGCGCACCGGGGCACCACGCGCCCG CGTACAGTCCTTCGCGCCGCAGGCCAGACGATCTCCGATCGGACGCTTTCGAAGATCCGGCTCCGCGAACGCGGGATGGA TGGCGCCATCGACCAGATCGTCCGCCTCGGTCTACCGGCGCCCGGCCTGCGCGAGAGCCCAGCCGCATGGCTCGCCCGCC TTCAGGCCGAGCAGCTCCTGACCCGCCACCGCCAATCCGGACTCTTCACCTACTGCTTCGAGCTCACCCGCAACGCGCGC CGACAGGGCCGCGCACTCCCGCGGTTGCCCTATCCTAAACTATTGCCGGGGCCGTGA
Upstream 100 bases:
>100_bases ATCCCTTCATGTCGATTCATGTCCAAAGAAGAGGGGAATGGGCCGGGGAGACCGGTCGGAGGCCAAGCGCCTTCGACCCC TTCCACCCGGGAGCCAGGAC
Downstream 100 bases:
>100_bases TCGCTCTCAGGCCTTGACGCCTTCGACATAGGTGATCGCCTCACCGACCGTCTGGTTCTTCTCCGCGTCGGCATCGGGGA TCGCGATTCCGAATTTCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues METSRSQRWRERRALWATDSLIINPKAYSVDIIDHAVARTFIAEHHYLPSYPAAQVAVGLFGLRAVLAGVAVFAVPATDA VITRHTGFTDPAKGCVLARLILLDRVPQNGESFFCARAFRLLRQARPAIEAVVSYSDPEFGHTGRVYAALSGAHRGTTRP RTVLRAAGQTISDRTLSKIRLRERGMDGAIDQIVRLGLPAPGLRESPAAWLARLQAEQLLTRHRQSGLFTYCFELTRNAR RQGRALPRLPYPKLLPGP
Sequences:
>Translated_258_residues METSRSQRWRERRALWATDSLIINPKAYSVDIIDHAVARTFIAEHHYLPSYPAAQVAVGLFGLRAVLAGVAVFAVPATDA VITRHTGFTDPAKGCVLARLILLDRVPQNGESFFCARAFRLLRQARPAIEAVVSYSDPEFGHTGRVYAALSGAHRGTTRP RTVLRAAGQTISDRTLSKIRLRERGMDGAIDQIVRLGLPAPGLRESPAAWLARLQAEQLLTRHRQSGLFTYCFELTRNAR RQGRALPRLPYPKLLPGP >Mature_258_residues METSRSQRWRERRALWATDSLIINPKAYSVDIIDHAVARTFIAEHHYLPSYPAAQVAVGLFGLRAVLAGVAVFAVPATDA VITRHTGFTDPAKGCVLARLILLDRVPQNGESFFCARAFRLLRQARPAIEAVVSYSDPEFGHTGRVYAALSGAHRGTTRP RTVLRAAGQTISDRTLSKIRLRERGMDGAIDQIVRLGLPAPGLRESPAAWLARLQAEQLLTRHRQSGLFTYCFELTRNAR RQGRALPRLPYPKLLPGP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28596; Mature: 28596
Theoretical pI: Translated: 11.49; Mature: 11.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METSRSQRWRERRALWATDSLIINPKAYSVDIIDHAVARTFIAEHHYLPSYPAAQVAVGL CCCCHHHHHHHHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FGLRAVLAGVAVFAVPATDAVITRHTGFTDPAKGCVLARLILLDRVPQNGESFFCARAFR HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LLRQARPAIEAVVSYSDPEFGHTGRVYAALSGAHRGTTRPRTVLRAAGQTISDRTLSKIR HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHH LRERGMDGAIDQIVRLGLPAPGLRESPAAWLARLQAEQLLTRHRQSGLFTYCFELTRNAR HHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RQGRALPRLPYPKLLPGP HHCCCCCCCCCCCCCCCC >Mature Secondary Structure METSRSQRWRERRALWATDSLIINPKAYSVDIIDHAVARTFIAEHHYLPSYPAAQVAVGL CCCCHHHHHHHHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FGLRAVLAGVAVFAVPATDAVITRHTGFTDPAKGCVLARLILLDRVPQNGESFFCARAFR HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LLRQARPAIEAVVSYSDPEFGHTGRVYAALSGAHRGTTRPRTVLRAAGQTISDRTLSKIR HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHH LRERGMDGAIDQIVRLGLPAPGLRESPAAWLARLQAEQLLTRHRQSGLFTYCFELTRNAR HHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH RQGRALPRLPYPKLLPGP HHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA