Definition | Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence. |
---|---|
Accession | NC_009507 |
Length | 310,228 |
Click here to switch to the map view.
The map label for this gene is 148550623
Identifier: 148550623
GI number: 148550623
Start: 74205
End: 74675
Strand: Reverse
Name: 148550623
Synonym: Swit_5184
Alternate gene names: NA
Gene position: 74675-74205 (Counterclockwise)
Preceding gene: 148550624
Following gene: 148550622
Centisome position: 24.07
GC content: 64.33
Gene sequence:
>471_bases ATGACCGCGACAGATCAATCTGCCGATGCCGCCATCACCGATCCGATCGAGGCCGAGTTGCAGGCGGCCCTGTCCGCCGT GCGGACAGTCGAGGCGCGCTGCAAGGATGCCTTCCTCCCGCATCTGCTCGATCATGGCATTGTCCGTGTCGAAATCCACT ACGATGGCGGCGGCGACCAAGGCAGCGTCGGTGATGTCAATGCCTACACGCTGGAAGGCGAGATCGCGCTGCCGCGCATC CTCTGCGATCACCATAGCCTCGCCTATAGCGGCGAAGTGTCGACCCGCACGATCGACCTCGAGGATGCTCTGAGCGCCTT CGTCGACAACGCCATCTGCGCGCGGCACGCCGGCTGGGAGGACGGGGAGGGCGCTTATGGCACCATCGCCATAGACGTCG CCAGCGGCGCGGTGACCCTCACGCACAACAGCCGGTTCATCGACTATGACACGACCGAGGCGGAGCTATAG
Upstream 100 bases:
>100_bases ACTTCCCGGTCGCCGACTTCGCGATACTCCACCGCAATCTGGCTGCAGGCTATCCCCGCAGCGCCGAGGCCGCACAGCGC CTCCCCGAGGAGATTTGACC
Downstream 100 bases:
>100_bases GCGATGTCGCACTGCTATTATCACGCGCTCAGCTCCGTGAAGCGCTGGGGCGGCGAGGCCGAGGACTATCTGCCCCTCCA CCAATGGTTCGACGAGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MTATDQSADAAITDPIEAELQAALSAVRTVEARCKDAFLPHLLDHGIVRVEIHYDGGGDQGSVGDVNAYTLEGEIALPRI LCDHHSLAYSGEVSTRTIDLEDALSAFVDNAICARHAGWEDGEGAYGTIAIDVASGAVTLTHNSRFIDYDTTEAEL
Sequences:
>Translated_156_residues MTATDQSADAAITDPIEAELQAALSAVRTVEARCKDAFLPHLLDHGIVRVEIHYDGGGDQGSVGDVNAYTLEGEIALPRI LCDHHSLAYSGEVSTRTIDLEDALSAFVDNAICARHAGWEDGEGAYGTIAIDVASGAVTLTHNSRFIDYDTTEAEL >Mature_155_residues TATDQSADAAITDPIEAELQAALSAVRTVEARCKDAFLPHLLDHGIVRVEIHYDGGGDQGSVGDVNAYTLEGEIALPRIL CDHHSLAYSGEVSTRTIDLEDALSAFVDNAICARHAGWEDGEGAYGTIAIDVASGAVTLTHNSRFIDYDTTEAEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16573; Mature: 16442
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATDQSADAAITDPIEAELQAALSAVRTVEARCKDAFLPHLLDHGIVRVEIHYDGGGDQ CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC GSVGDVNAYTLEGEIALPRILCDHHSLAYSGEVSTRTIDLEDALSAFVDNAICARHAGWE CCCCCCEEEEEECCCCCCCEEECCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCCC DGEGAYGTIAIDVASGAVTLTHNSRFIDYDTTEAEL CCCCCEEEEEEEECCCEEEEEECCEEEECCCCCCCC >Mature Secondary Structure TATDQSADAAITDPIEAELQAALSAVRTVEARCKDAFLPHLLDHGIVRVEIHYDGGGDQ CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC GSVGDVNAYTLEGEIALPRILCDHHSLAYSGEVSTRTIDLEDALSAFVDNAICARHAGWE CCCCCCEEEEEECCCCCCCEEECCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCCC DGEGAYGTIAIDVASGAVTLTHNSRFIDYDTTEAEL CCCCCEEEEEEEECCCEEEEEECCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA