Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 148550589

GI number: 148550589

Start: 42085

End: 43284

Strand: Direct

Name: xerD [H]

Synonym: Swit_5150

Alternate gene names: 148550589

Gene position: 42085-43284 (Clockwise)

Preceding gene: 148550585

Following gene: 148550594

Centisome position: 13.57

GC content: 65.5

Gene sequence:

>1200_bases
ATGACCGAGAGTTCCACCAAATCCTCCCCCATGGAAATCATCGTCGTCAGGACGAACGACACTGCTCTGCCGACACGATC
GCGCAAGACAGACGCCGAATCCGTCGATGTGCGGCTGCTGCGCACGATCGGGGAAATCATTCCGACCGATCTACCGCCGA
TCAGTCAGCTCGGTCTCGAGACGACCCTGGCGGCGATGGCCGACGCGACGAAGGCGGCGATAGCCGCCGATCTCGACTGC
TGGCGCGACTGGTGCGGTGAAGAAGGCCGCAGGCCATTGCCAGCCGATCCCGAAGATATGGTGCGCTATGTAAACGCGCT
GGACGCCAAAGGCAGGAAGCCCGCGACGCTGGCGCGGCGCATCGCCAGCATCGCCTCGGTCCACCGCATGCTGGGCTTGG
CCTCGCCCGCCGCGCCGACCGACGCCCCGATGGTTCGCGCCGCGCTGAAGGCCATCCGCCGGCAGAGAGGCGCACTTCAG
CGTCAGGCTGCGCCTCTGCGGTTAGGCAAGGCGCTGGATCACCACGCCGCCAAAGGCTTCACCCTGGCTGCGCTACTCGA
AGCGTGTGGCGGCGATCTTCAGGGGTTACGGGACGCGGCGTTGCTTTCGCTCGGCTATGACGCAGGGCTCCGGGTCAGCG
AGCTCACTAGGGTTGAAGCCACGCATATCGATGCGCAGGACGACGGCTCGGCGACCTTGTTCATCCCCTTCTCCAAAACC
GACCAGGAGCAGGAAGGCGCGTGGGCGTGGCTGTCGGCCGAGACGATGCGCAGGGTCGCCTTGTGGCAGGCCGAAAGCGC
GATCGAGGACGGGCTGCTGTTTCGCAGGGTTGGTGTCTATCGCCGGCGCGCGCGCGGCTCCGATCCGGAAACGGCACTGG
CCCGAACGACCTACACCATCGGCAAGGAGGCCCTCAGTCGGCAGGGGGTCAATGGGATCTACAGGCGCGTGGCGAGTGCC
GCCTACGAAATGGGGCTGGTCAACCTGAGCGCCAGCAAGCTGGCCGATGCGGTTCAGGCGCTGTCCACACATTCGCTGCG
CGTTGGCCTGACCCAGGACCTCTTCGCCGCCGGAGAGGACGGAGCCGGCATTGCGCAGGCGCTGCGATGGAGTTCACCGA
CAACCGCGCTACGTTACGGTAGAAAGCTCGCGGTGCGAAGCAATGTCGCCGCACGGGTTCTTTCAAGAGTACGTAGCTGA

Upstream 100 bases:

>100_bases
TCTTCCAGCTGCCGAAGGTTTCGCGGACCTCCCGGCCAAGGGCCAGAGCTTTTGCCGAGTTGAGCTGCATCATATCCTCC
GGGAAGACATATAGCGAACG

Downstream 100 bases:

>100_bases
CCTTGACGCCTCGCCGCTCGTGGTTCGGCAGCAGAAGGAGGCATGATCTCTCCCAAATATGGAAGATAGCCTAAATATGG
ACTGCGCGCCCGAAGGCAGC

Product: phage integrase domain/SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLETTLAAMADATKAAIAADLDC
WRDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARRIASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQ
RQAAPLRLGKALDHHAAKGFTLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKT
DQEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTIGKEALSRQGVNGIYRRVASA
AYEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGEDGAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS

Sequences:

>Translated_399_residues
MTESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLETTLAAMADATKAAIAADLDC
WRDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARRIASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQ
RQAAPLRLGKALDHHAAKGFTLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKT
DQEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTIGKEALSRQGVNGIYRRVASA
AYEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGEDGAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS
>Mature_398_residues
TESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLETTLAAMADATKAAIAADLDCW
RDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARRIASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQR
QAAPLRLGKALDHHAAKGFTLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKTD
QEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTIGKEALSRQGVNGIYRRVASAA
YEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGEDGAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42988; Mature: 42857

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLE
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TTLAAMADATKAAIAADLDCWRDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
IASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQRQAAPLRLGKALDHHAAKGF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCH
TLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKT
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
DQEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTI
CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GKEALSRQGVNGIYRRVASAAYEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGED
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCHHHHHHCCCC
GAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS
CHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TESSTKSSPMEIIVVRTNDTALPTRSRKTDAESVDVRLLRTIGEIIPTDLPPISQLGLE
CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
TTLAAMADATKAAIAADLDCWRDWCGEEGRRPLPADPEDMVRYVNALDAKGRKPATLARR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
IASIASVHRMLGLASPAAPTDAPMVRAALKAIRRQRGALQRQAAPLRLGKALDHHAAKGF
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCH
TLAALLEACGGDLQGLRDAALLSLGYDAGLRVSELTRVEATHIDAQDDGSATLFIPFSKT
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
DQEQEGAWAWLSAETMRRVALWQAESAIEDGLLFRRVGVYRRRARGSDPETALARTTYTI
CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GKEALSRQGVNGIYRRVASAAYEMGLVNLSASKLADAVQALSTHSLRVGLTQDLFAAGED
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECCHHHHHHCCCC
GAGIAQALRWSSPTTALRYGRKLAVRSNVAARVLSRVRS
CHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]