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The map label for this gene is tnpR [C]

Identifier: 148550561

GI number: 148550561

Start: 6236

End: 7108

Strand: Reverse

Name: tnpR [C]

Synonym: Swit_5122

Alternate gene names: 148550561

Gene position: 7108-6236 (Counterclockwise)

Preceding gene: 148550562

Following gene: 148550557

Centisome position: 2.29

GC content: 58.53

Gene sequence:

>873_bases
TTGCACTTGGCTCGTATCGGATATGCCCGCGTCAGCACCACGGACCAGGATCTGGATATCCAGATTGGCCGCCTCAAGAA
TGCAGGTTGCGAAATTATCCGTTCCGAGACCGGATCGGGGGCCTCGCGGAGCGGGCGCACGGAACTGGAAACGATCATGC
AGTTTATGCACACCGGCGACGAGCTGGTCGTGCTGCGGCTCGACCGGCTCGGCCGCTCCACGCGCGATGTCCTGAACCTG
GTGCATGAGCTTGATGAAAAGGGAGCTTCGCTGCGCATCCTTGAGCCAGAGGTGACGACGGCGGGCGACATGGGGCGAAT
GGTCATCACCATACTCGGCATGGTCGCCGATATGGAGCTGAAGTTCATCAAGGATCGTCAGCGCGCCGGGATCGAAGCGG
CGCGCGCCGAAGGCGTTTACAAAGGCCGGAAGAAGAACGTCGATGACGATGAAATCCGCCGTCGCCTTGCCGCCGGCGCC
AGCAAGGCCCGCGTTGCCCGCGACCTGAAGGTCTCACGAATGACCGTCTATCGGGCGCTCGACATTATTCCGTCACAGAC
CAAACTGCCGGAAAAGCCGCCCACTGCCAGCATCGCCCTGCATCTGATTATCGAGAACTTCAACAAGCGTGGAAGAGGTA
GAAAACCCGCTCGGGAGCGGATTGAGGCGATGCTGGAACGCGACTACGCCATGGTAAAAAACGGCAATTGTGATTACAAA
CTGACCGTCGCCTATGACCCCGATCCGGATGGCATTTCCCTTGATGAGGAAATCCAAAGCCTCCTCTCCGAGATGTTCAA
CATCGCAGAGAGCTACAATTGCTCCATGGAAGCCGATATCTACGAGGTCGGTGGTCAGCAACGGTCCTGGTAG

Upstream 100 bases:

>100_bases
AGAGTGATAGGGCCGAGTGACACCATTCGTCTGTCACAAAAGGGTGGGTTTGCGCTCAATGTGACGATACACTGCAAGAG
CCACCCTAATGTGACGGATT

Downstream 100 bases:

>100_bases
AATCAATCAAGCGTTCAGTGTTCGTTCTTCAACCTGGCCAAAATCGCAGCTTCGGGCCGACTGGGCCTAATAACTACCAT
GGCGTGATTGCTTCGCCGAA

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MHLARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGDELVVLRLDRLGRSTRDVLNL
VHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMELKFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGA
SKARVARDLKVSRMTVYRALDIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYK
LTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW

Sequences:

>Translated_290_residues
MHLARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGDELVVLRLDRLGRSTRDVLNL
VHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMELKFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGA
SKARVARDLKVSRMTVYRALDIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYK
LTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW
>Mature_290_residues
MHLARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGDELVVLRLDRLGRSTRDVLNL
VHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMELKFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGA
SKARVARDLKVSRMTVYRALDIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYK
LTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW

Specific function: This Protein Catalyzes The Site-Specific Recombination Of The Transposon And Also Regulates Its Frequency Of Transposition. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=176, Percent_Identity=40.3409090909091, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787638, Length=183, Percent_Identity=28.9617486338798, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787827, Length=183, Percent_Identity=28.9617486338798, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 32545; Mature: 32545

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGD
CCCCCCCCEEECCCCCCCEEEEECCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHCCC
ELVVLRLDRLGRSTRDVLNLVHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMEL
CEEEEEEHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
KFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGASKARVARDLKVSRMTVYRAL
HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYK
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCEE
LTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MHLARIGYARVSTTDQDLDIQIGRLKNAGCEIIRSETGSGASRSGRTELETIMQFMHTGD
CCCCCCCCEEECCCCCCCEEEEECCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHCCC
ELVVLRLDRLGRSTRDVLNLVHELDEKGASLRILEPEVTTAGDMGRMVITILGMVADMEL
CEEEEEEHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
KFIKDRQRAGIEAARAEGVYKGRKKNVDDDEIRRRLAAGASKARVARDLKVSRMTVYRAL
HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DIIPSQTKLPEKPPTASIALHLIIENFNKRGRGRKPARERIEAMLERDYAMVKNGNCDYK
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCEE
LTVAYDPDPDGISLDEEIQSLLSEMFNIAESYNCSMEADIYEVGGQQRSW
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]